Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014847.1 Length=2723 Score E Sequences producing significant alignments: (Bits) Value seq519 107 3e-20 seq3069 86.0 1e-13 >seq519 Length=3254320 Score = 107 bits (118), Expect = 3e-20 Identities = 237/347 (68%), Gaps = 10/347 (3%) Strand=Plus/Plus Query 2200 CCTCTAGCAGATCGTCCGTCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTG 2259 || |||||||||| ||| || || ||||| || | || || | ||| || ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2260 TCGATGTAGGATTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGT 2319 |||||||| ||||| || | ||| | ||||||| || | || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2320 GCTGACCTGCTTGGG-GAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCC 2378 | ||| | ||| || | | ||| || |||| ||||| ||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2379 CTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCATTTTCATGAAGTTCTCTGCAGAT 2438 ||| ||||| || || |||| ||| |||||||| || || |||||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2439 TTTAATATAtttt---tttGAAGTGGGGGTTTGGAAATTCTTGATTTGGGAAAGTGCTTC 2495 | | || ||||| |||| || || ||| || | |||| || ||| || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAG-GGTAGTT--GAGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2496 TTCTTTGGTGAGAGAGCA-CTTGGGATAAGTGAGGAAATAATTTTTG 2541 ||||| ||||| || || ||||||| |||||||||||| ||||||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTG 1743483 Score = 89.7 bits (98), Expect = 9e-15 Identities = 235/348 (68%), Gaps = 13/348 (4%) Strand=Plus/Plus Query 2200 CCTCTAGCAGATCGTCCGTCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTG 2259 || ||| |||||| ||| || || ||||| || |||| || | | ||| || ||||| Sbjct 1748957 CCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTT 1749016 Query 2260 TCGATGTAGGATTTGACG--TCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAAT 2317 || ||||| ||||| || || || | |||||||| || | || |||||||| | Sbjct 1749017 TCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATT 1749076 Query 2318 GTGCTGACCTGCTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCC 2377 | | || || ||| | |||||| || | ||||| ||| | |||||| Sbjct 1749077 GAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCC 1749135 Query 2378 CCTCGAACTGGATGAGCACGTGCAGATGAGGTTCCCCATTTTCATGAAGTTCTCTGCAGA 2437 | ||||| || || || |||| ||| ||||||| | | || ||||||||||| | Sbjct 1749136 CTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCTG-TGTAGTTCTCTGCACA 1749193 Query 2438 TTTTAATATAtttt---tttGAAGTGGGGGTTTGGAAATTCTTGATTTGGGAAAGTGCTT 2494 ||| || |||| |||| || || ||| || || |||| || ||| | | Sbjct 1749194 CTTTTATGAATTTAAGATTTGTAG-GGTAGTT--GAGGTTTTTGAGATGACGAAGAACAT 1749250 Query 2495 CTTCTTTGGTGAGAGAGCA-CTTGGGATAAGTGAGGAAATAATTTTTG 2541 | ||||| ||||| | || ||||||| ||||||| |||||||||||| Sbjct 1749251 CATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTG 1749297 >seq3069 Length=10854949 Score = 86.0 bits (94), Expect = 1e-13 Identities = 192/281 (68%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 1204 AGTCGGAGGGTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCACTCCCAG 1263 ||||| ||| ||| ||||||||||| ||| || | ||| || | | || Sbjct 3754344 AGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATCCATGCCTTCTGAAATTTCAA 3754403 Query 1264 AGCTTTCCGAAGGTTGTAGTTGAATTGGATCCTCATTGTTATGATGTCCATGTTCGTCGT 1323 ||||||| |||||| |||||||||| ||| || ||||||||| || |||| || Sbjct 3754404 GGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCG-TGGTCGTTGT 3754462 Query 1324 GAA-TGGACGGTTGTCGTGGTTGAGGATT--TTGAAATAAAGGGGATTTGGAACCTCCCA 1380 || ||| | | | ||| | | | | |||||||| ||||||||||| || || || Sbjct 3754463 TAAATGGTCTCCTCTGGTG--TCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1381 GATAAAGACGCCATTCGTTG-AATGAGCTGCAGTGATGCGTTCCCCTGTGCGAGAATCCA 1439 ||| | ||| |||| |||| | | ||| | ||||| || ||| |||||| ||| || Sbjct 3754521 AATATATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1440 TGGTTGTGGCAGTTGATACTTAGGTAATAGCTGCATCCACA 1480 | ||| | ||| || || | |||| || |||| ||||| Sbjct 3754580 TTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8604487505932