Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014894.1 Length=2724 Score E Sequences producing significant alignments: (Bits) Value seq519 104 4e-19 seq3069 82.4 1e-12 >seq519 Length=3254320 Score = 104 bits (114), Expect = 4e-19 Identities = 241/355 (68%), Gaps = 10/355 (3%) Strand=Plus/Plus Query 2200 CCTCTAGCAGATCGTCCGTCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTG 2259 || |||||||||| ||| || || ||||| || | || || | ||| || ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2260 TCGATGTAGGATTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGT 2319 |||||||| ||||| || | ||| | ||||||| || | || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2320 GCTGACCTGCTTGGG-GAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCCC 2378 | ||| | ||| || | | ||| || |||| ||||| ||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2379 CTCGATCTGGATGAGCACGTGCAGATGAGGTTCCCCATTTTCATGAAGTTCTCTGCAGAT 2438 || ||||| || || |||| ||| |||||||| || || |||||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2439 TTTAATATAtttt---tttGAAGTGGGGGTTTGGAAATTCTTGATTTGGGAAAGTGCTTC 2495 | | || ||||| |||| || || ||| || | |||| || ||| || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAG-GGTAGTT--GAGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2496 TTCTCTTGTGAGAGAGCA-CTTGGGATAAGTGAGGAAATAATTTTTGGAATTAAT 2549 ||| ||||||| || || ||||||| |||||||||||| ||||||| ||| || Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTAT 1743491 Score = 86.0 bits (94), Expect = 1e-13 Identities = 239/356 (67%), Gaps = 13/356 (4%) Strand=Plus/Plus Query 2200 CCTCTAGCAGATCGTCCGTCGATCTGAAACTCTCCCCACTCGAGAGTGTCCCCGTCCTTG 2259 || ||| |||||| ||| || || ||||| || |||| || | | ||| || ||||| Sbjct 1748957 CCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTT 1749016 Query 2260 TCGATGTAGGATTTGACG--TCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAAT 2317 || ||||| ||||| || || || | |||||||| || | || |||||||| | Sbjct 1749017 TCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATT 1749076 Query 2318 GTGCTGACCTGCTTGGGGAGACCAGGTCGAAGAATCGCTGATTCTGGCACTTGTATTTCC 2377 | | || || ||| | |||||| || | ||||| ||| | |||||| Sbjct 1749077 GAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCC 1749135 Query 2378 CCTCGATCTGGATGAGCACGTGCAGATGAGGTTCCCCATTTTCATGAAGTTCTCTGCAGA 2437 | || || || || || |||| ||| ||||||| | | || ||||||||||| | Sbjct 1749136 CTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCTG-TGTAGTTCTCTGCACA 1749193 Query 2438 TTTTAATATAtttt---tttGAAGTGGGGGTTTGGAAATTCTTGATTTGGGAAAGTGCTT 2494 ||| || |||| |||| || || ||| || || |||| || ||| | | Sbjct 1749194 CTTTTATGAATTTAAGATTTGTAG-GGTAGTT--GAGGTTTTTGAGATGACGAAGAACAT 1749250 Query 2495 CTTCTCTTGTGAGAGAGCA-CTTGGGATAAGTGAGGAAATAATTTTTGGAATTAAT 2549 | ||| ||||||| | || ||||||| ||||||| |||||||||||| ||| || Sbjct 1749251 CATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTAT 1749305 >seq3069 Length=10854949 Score = 82.4 bits (90), Expect = 1e-12 Identities = 169/244 (69%), Gaps = 8/244 (3%) Strand=Plus/Plus Query 1265 GCTCTCCGAAGGTTGTAGTTGAATTGGATCCTGATTTTTATTATGTCCATGTTCGTCGTG 1324 ||| ||| |||||| |||||||||| ||| ||| | ||| ||||| || |||| || Sbjct 3754405 GCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCG-TGGTCGTTGTT 3754463 Query 1325 AA-TGGACGGTCGTCGTGGCTGAGGAT--CTTGAAATAGAGGGGATTTGGAACCTCCCAG 1381 || ||| | || || | | | | | ||||||||| ||||||||||| || || || Sbjct 3754464 AAATGGTC--TCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAA 3754521 Query 1382 ATAAAGACGCCATTCCTTGTA-TGAGCTGCAGTGATGCGTTCCCCTGTGCGAGAATCCAT 1440 ||| | ||| |||| ||| | | ||| | ||||| || ||| |||||| ||| ||| Sbjct 3754522 ATATATACGTCATT-GTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACAT 3754580 Query 1441 GGTTGAAGCAGTTAATGGATAGATAATAAGAACACCCGCATTCAAGATCTACTCTCTTCC 1500 ||| ||| |||||| | | || || | || || |||| | || || | ||| | Sbjct 3754581 TGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTATATATAAACACGCTTTC 3754640 Query 1501 TCCT 1504 |||| Sbjct 3754641 TCCT 3754644 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8607687389720