Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014902.1 Length=2727 Score E Sequences producing significant alignments: (Bits) Value seq2957 95.1 2e-16 seq1129 86.0 1e-13 seq3069 82.4 1e-12 seq519 77.0 6e-11 >seq2957 Length=4215098 Score = 95.1 bits (104), Expect = 2e-16 Identities = 178/250 (71%), Gaps = 9/250 (4%) Strand=Plus/Plus Query 1296 GCCTTCCTTAAGTTGTGGTTGAATCTG-ATCTGGACAGTCAAA-ATGTCGTTGTTGCTGT 1353 || ||| | | ||||| |||||| ||| ||||||| ||| | |||| | ||| ||| Sbjct 1238752 GCTTTCTTGAGGTTGTCGTTGAA-CTGTATCTGGAT-GTCTATGATGTTGAGTTTGTTGT 1238809 Query 1354 TGAACGGTCTCTTGTGATGCTCGAGG-ATCTTGAAATATAGGGGATTTTTTATCTCCCAG 1412 |||| | |||| | || || || | ||||||||||| || ||||| || ||| || Sbjct 1238810 TGAATGATCTCCTTTGGTG-TCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1413 ATATATACGCCATTCTGTGC-TTGAATTGCAGTGATGTTCTCCCCTGTGCGTAAATCCAT 1471 ||||||| |||| | ||| ||| ||| ||| ||| | | ||||| |||||||| Sbjct 1238869 GTATATACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCAT 1238927 Query 1472 GGTTAGCACAGTTAATGTGCATATAATAT-GAGCAGCCGCACTTGAGGTCAATTCGTTTG 1530 ||| | |||||||||||| |||||| | ||| || ||||| || ||| | || || Sbjct 1238928 TGTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCACTACGCTTT 1238987 Query 1531 CGTCGAATTG 1540 | || ||||| Sbjct 1238988 CTTCTAATTG 1238997 >seq1129 Length=1508174 Score = 86.0 bits (94), Expect = 1e-13 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 1299 TTCCTTAAGTTGTGGTTGAATCTG-ATCTGGACAGTCAAAATGTCGTTGTTGCTGTTGAA 1357 ||||| ||||||| |||||| ||| ||||||| | |||| || | || ||||||| Sbjct 693774 TTCCTAAAGTTGTAGTTGAA-CTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1358 CGGTCTCTTGTGATGCTCGAGGATCTTGAAATATAGGGGATTTTTTATCTCCCAGATATA 1417 ||||||| | || || | |||||| |||| ||||| ||| | ||||| |||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATA-GGGGGAATTTAAACTTCCCAAGTATA 693657 Query 1418 TACGCCATTCTGTGCTTGAATTGCAGTGATGTTCTCCCCTGTGCGTAAATCCATGGTTAG 1477 ||||||||| | | | | | ||| ||| | | | ||| || || |||||||| ||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCATCGTTCA 693598 Query 1478 CACAGTTAATGTGCATATAATATGAGCA 1505 |||||||||| ||||||| ||| Sbjct 693597 TGTAGTTAATGTGTTGGTAATATGTGCA 693570 >seq3069 Length=10854949 Score = 82.4 bits (90), Expect = 1e-12 Identities = 178/260 (68%), Gaps = 10/260 (4%) Strand=Plus/Plus Query 1235 AGTCGGAGGCCGTAAGGTCGTCCAAATTTTGAAGGTCAAAAAACAT---TTGTGAATCCC 1291 ||||| ||| ||| |||||||| || ||||| || | ||| || |||| Sbjct 3754344 AGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAA---AATATCCATGCCTTCTGAAATTT 3754400 Query 1292 CAGTGCCTTCCTTAAGTTGTGGTTGAATCTGATCTGGACAGTCAAAATGTCGTTGTTGCT 1351 || || ||||| | |||| ||||||| ||||||| | ||||||| || | | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1352 GTTGAACGGTCTCTTGTGATGCTCGAGG-ATCTTGAAATATAGGGGATTTTTTATCTCCC 1410 ||| || |||||| | || || || | | ||||||||||||||||||| || || | Sbjct 3754461 GTTAAATGGTCTCCTCTGGTG-TCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTC 3754519 Query 1411 AGATATATACGCCATTCTGTGC-TTGAATTGCAGTGATGTTCTCCCCTGTGCGTAAATCC 1469 | ||||||||| |||| | ||| | | | ||||| || | ||| ||||| |||| | Sbjct 3754520 AAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATAC 3754578 Query 1470 ATGGTTAGCACAGTTAATGT 1489 || ||| || ||||||| Sbjct 3754579 ATTGTTCTTGCAATTAATGT 3754598 >seq519 Length=3254320 Score = 77.0 bits (84), Expect = 6e-11 Identities = 162/235 (69%), Gaps = 9/235 (4%) Strand=Plus/Plus Query 1299 TTCCTTAAGTTGTGGTTGAATCTGATCTGGACAGTCAAAATGTCGTTGTTGCTGTTGAAC 1358 ||||| | |||| |||||| ||||||| | ||||||| |||| |||| || Sbjct 1741877 TTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAAT 1741936 Query 1359 GGTCTCTTGTGATGCTCGAGG-ATCTTGAAATATAGGGGATTTTTTATCTCCCAGATATA 1417 ||||| | || | ||| | ||||||||||| |||| |||| || ||||| ||| Sbjct 1741937 TGTCTCCTCTGGTT-TCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1418 TACGCCATTCTGTGCT-TGAATTGC--AGTGATGTTCTCCCCTGTGCGTAAATCCATGGT 1474 ||| ||||| | ||| ||| || ||||| | ||||| ||| | |||||||| || Sbjct 1741996 TACACCATTGT-TGCACTGA---GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGT 1742051 Query 1475 TAGCACAGTTAATGTGCATATAATATGAGCAGCCGCACTTGAGGTCAATTCGTTT 1529 | |||||||||||| |||||| ||| || || | | ||||| || || Sbjct 1742052 TCCTACAGTTAATGTGTTGGTAATATATGCAACCACAGTATATATCAATGCGCTT 1742106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8617287041084