Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_014968.1 Length=2799 Score E Sequences producing significant alignments: (Bits) Value seq519 95.1 2e-16 seq1694 82.4 1e-12 seq1129 82.4 1e-12 >seq519 Length=3254320 Score = 95.1 bits (104), Expect = 2e-16 Identities = 242/366 (66%), Gaps = 2/366 (1%) Strand=Plus/Plus Query 2256 TGCTGGCCTCCTCTAGCAGATCTGCCGTCGACCTGGAACTCACCCCATTCCAATGTGTCT 2315 |||| | ||| ||||||||||| || || | || || ||| | || || | |||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2316 CCGTCCTTATCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCTCTGGATATTGGGA 2375 || ||||| |||| ||| || || || | ||| | ||||||| || | ||| || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2376 TGAAAGTGAGTCGACCT-TGATGGGGAAACAAGGTCGAAGAATCTCTGATTCGTGCATTG 2434 || || ||| | | || | | || || | | ||| || |||| ||||| ||||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2435 GTAGTTCCCTTCGAACTGCAACAACACGTGGAGATGAGGTTCCCCATTTTCATGCAGCTC 2494 | | || ||| ||| || | | || || | ||| |||||||| || || || || Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2495 TCTGCATATTTTGATGAATTTTTTGTTTGTTGGTGTGTTGAGATTAAGAAGTTGGTCGAG 2554 | |||| | | | ||||||||| ||||| || |||||| | || || | || Sbjct 1743372 TTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAG 1743431 Query 2555 AGCTTCTTCTTTGGTAAGAGAACATTGAGGATATGTAAGGAAATAGTTTTTGGCTTTTAT 2614 ||| || ||||| || || |||||| || | || ||||||| |||||| ||||| Sbjct 1743432 AGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTAT 1743491 Query 2615 ATTAAA 2620 |||| Sbjct 1743492 TCTAAA 1743497 Score = 93.3 bits (102), Expect = 7e-16 Identities = 310/475 (65%), Gaps = 7/475 (1%) Strand=Plus/Plus Query 2149 TATGATATTGGAAAATAAATTTCTCAGGGAGTTTCTCCCTGATTATTTGTAAGGCAGCTT 2208 |||||||||| | ||| || ||| ||| |||||| | ||||||||||| || || | Sbjct 1748841 TATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATTATTTGTAATGCTGCAT 1748900 Query 2209 CT-TTGCTGCTTGCATTTAGGGCCTCTGCTGCTGCGTCTTTAGCAGTCTGCTGGCCTCCT 2267 || ||| ||| | ||| | || || || | | ||| | | | | || | ||| Sbjct 1748901 CTCTTGGTGCAT-AATTAATCGCTTCAGCGTATACATCTGCAACTATTTTCTTACATCCC 1748959 Query 2268 CTAGCAGATCTGCCGTCGACCTGGAACTCACCCCATTCCAATGTGTCTCCGTCCTTATCG 2327 ||| ||||||| || || | || || ||| |||| || | |||||| ||||| || Sbjct 1748960 CTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCA 1749019 Query 2328 ACGTAGGACTTGA--CGTCGGAGCTGGATTTAGCTCTCTGGATATTGGGATGAAAGTGAG 2385 | ||| || || | | || || | |||||||| || | ||| ||||| || ||| Sbjct 1749020 ATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAA 1749079 Query 2386 TCGACCTTGATGGGGAAACAAGGTCGAAGAATCTCTGATTCGTGCATTGGTAGTTCCCTT 2445 | | | | | ||| | |||||| || | ||||| ||||| | | |||||| Sbjct 1749080 TGGTTC-TATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTG 1749138 Query 2446 CGAACTGCAACAACACGTGGAGATGAGGTTCCCCATTTTCATGCAGCTCTCTGCATATTT 2505 ||||| | | || || | ||| |||| ||| || || || |||||||| | || Sbjct 1749139 TGAACT-AGAGATTACATGCAAATGTGGTT-CCCGTTGCTGTGTAGTTCTCTGCACACTT 1749196 Query 2506 TGATGAATTTTTTGTTTGTTGGTGTGTTGAGATTAAGAAGTTGGTCGAGAGCTTCTTCTT 2565 | |||||||| ||||| || |||||| || || || ||| | || |||| Sbjct 1749197 TTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTT 1749256 Query 2566 TGGTAAGAGAACATTGAGGATATGTAAGGAAATAGTTTTTGGCTTTTATATTAAA 2620 | || || ||||| || | || || ||||| |||||| ||||| |||| Sbjct 1749257 TTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 2408 GTCGAAGAATCTCTGATTCGTGCATTGGTAGTTCCCTTCGAACTGCAACAACACGTGGAG 2467 |||||| || | ||||| ||||||| | | |||||| |||||| | | ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2468 ATGAGGTTCCCCATTTTCATGCAGCTCTCTGCATATTTTGATGAATTTTTTGTTTGTTGG 2527 ||| |||||||| | ||||| |||||||| | | |||||||| ||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2528 TGTGTTGAGATTAAGAAGTTGGTCGAGAGCTTCTTCTTTGGTAAGAGAACATTGAGGATA 2587 |||||| || || || | ||| | || ||||| | ||||||||| || | Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAA 588070 Query 2588 TGTAAGGAAATAGTTTTTGGCTTTTATATTAAA 2620 || ||||||||||||| | ||||| |||| Sbjct 588069 AGTGAGGAAATAGTTTTAGCTATTTATTCTAAA 588037 >seq1129 Length=1508174 Score = 82.4 bits (90), Expect = 1e-12 Identities = 153/220 (70%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 2408 GTCGAAGAATCTCTGATTCGTGCATTGGTAGTTCCCTTCGAACTGCAACAACACGTGGAG 2467 |||||| || || ||||| |||||| | | |||||| |||||| | | ||||| | Sbjct 678628 GTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 678569 Query 2468 ATGAGGTTCCCCATT---TTCATGC--AGCTCTCTGCATATTTTGATGAATTTTTTGTTT 2522 ||| |||||||| || ||| || | | |||| ||| | ||||| ||| ||| Sbjct 678568 ATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTT 678509 Query 2523 GTTGGTGTGTTGAGATTAAGAAGTTGGTCGAGAGCTTCTTCTTTGGTAAGAGAACAT--T 2580 || || |||||| || || | || | ||||| || ||||| | ||||||||| | Sbjct 678508 GTAGGGTAGTTGAGGTTTTGA-GATGATGAAGAGCATCATCTTTTGAGAGAGAACATCTT 678450 Query 2581 GAGGATATGTAAGGAAATAGTTTTTGGCTTTTATATTAAA 2620 ||| | || ||||||||||||||| ||||| |||| Sbjct 678449 GAGAAACTG--AGGAAATAGTTTTTGCTATTTATTCTAAA 678412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8844469342680