Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015043.1 Length=2679 Score E Sequences producing significant alignments: (Bits) Value seq1129 165 1e-37 seq519 141 2e-30 seq1694 127 3e-26 >seq1129 Length=1508174 Score = 165 bits (182), Expect = 1e-37 Identities = 273/390 (70%), Gaps = 8/390 (2%) Strand=Plus/Minus Query 1541 AATTTCGCATTATGGAGAGTCCAGTTTCTCAGAGATGCATTTTCCTGCTTGTCTAGGAAA 1600 |||| ||||| ||||| ||| | || | || | ||||||||| || ||||||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1601 TCTTTATAGCTGGCTCCCTCACCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTA 1660 |||||||||| || || ||||||||||| || | | ||||||||||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1661 ATTTGAACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGTGCACCAATCAGC 1720 ||| |||| || ||||| ||||||||||| ||||| |||||||| | ||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCCAATCAAA 679276 Query 1721 TCCTTCCAGTGCTTTAGCTTTAGATAATGCGGTGTGACATCATCGATGACGTTGTACAGG 1780 || ||| | ||||| | ||||| ||| || || |||||||| ||||| || || Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1781 ACATTATTGGAGTAGACCCTTGGATTGAAGTCCA---GATGTCCACTAAGATAATTATGT 1837 ||| |||| | | || | ||||| || | |||| || ||| |||||||| Sbjct 679215 GCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATGA 679156 Query 1838 GGGCCTAACGCACGAGCCCACATTGTCTTCCCTGTCCTTGAAT--CACCTTCGACGATGA 1895 || | | | || ||| | | || || ||| | | || | ||||| | ||| | Sbjct 679155 CGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT--TCGACTTGGGCCTTCAATGATTA 679098 Query 1896 TACTCATAGGTCTCTCTGGCCGCGCAGCGG 1925 |||| ||||||| ||||||| |||| ||| Sbjct 679097 TACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 141 bits (156), Expect = 2e-30 Identities = 147/193 (76%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1541 AATTTCGCATTATGGAGAGTCCAGTTTCTCAGAGATGCATTTTCCTGCTTGTCTAGGAAA 1600 |||| ||||| || || |||| || | |||| | ||||||||| || ||||||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1601 TCTTTATAGCTGGCTCCCTCACCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTA 1660 ||||||||| || ||||||| | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1661 ATTTGAACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGTGCACCAATCAGC 1720 |||| ||| | |||| |||||||||| ||||| |||||||| | ||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1721 TCCTTCCAGTGCT 1733 || ||||| |||| Sbjct 1742432 TCTTTCCAATGCT 1742444 >seq1694 Length=789422 Score = 127 bits (140), Expect = 3e-26 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 1541 AATTTCGCATTATGGAGAGTCCAGTTTCTCAGAGATGCATTTTCCTGCTTGTCTAGGAAA 1600 |||| ||||| ||||| ||||| || | || | ||||||||| | || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1601 TCTTTATAGCTGGCTCCCTCACCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTA 1660 ||||||||| || || ||||||||||| || | |||||||||| ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1661 ATTTGAACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGTGCACCAATCAGC 1720 |||||||| | ||||| |||||||||| ||||| |||||||| | ||||| | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1721 TCCTTCCAGTGCTTTAGCTTTAGATAATGCGGTGTGACATCATCGATG 1768 || ||| | ||||| | ||||| ||| || | ||||||| ||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATG 599645 Score = 105 bits (116), Expect = 1e-19 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1547 GCATTATGGAGAGTCCAGTTTCTCAGAGATGCATTTTCCTGCTTGTCTAGGAAATCTTTA 1606 |||| ||||| | ||| || |||| | ||||||||| || || | ||||||| | Sbjct 596270 GCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTG 596211 Query 1607 TAGCTGGCTCCCTCACCTGGATTGCAGAGCACGATTGATGGGATTCCTCCTTTAATTTGA 1666 ||| || || |||| | ||||||| | |||||||||||||| || |||||||||| | Sbjct 596210 TAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTA 596151 Query 1667 ACTGGCTTCCCGTACTTGCAATT 1689 || || ||||| ||||||||||| Sbjct 596150 ACGGGTTTCCCATACTTGCAATT 596128 Score = 77.0 bits (84), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 1322 TATCTTGAAATACAGGGGATTTGTTATTTCCCAGATATAGACGCCATTCTCTGC-CTGAG 1380 |||||||||||| || |||||| || |||||| ||| |||||||| | ||| | ||| Sbjct 596570 TATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTGT-TGCACCGAG 596512 Query 1381 GCACAGTGATGAGTTCCCCTGTGCGTGAATCCATGGTTACTGCA 1424 |||||||| ||||||| |||| ||||||| ||| ||||| Sbjct 596511 CCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCA 596468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8463692619260