Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015045.1 Length=2717 Score E Sequences producing significant alignments: (Bits) Value seq1129 143 5e-31 seq519 129 1e-26 seq1694 113 8e-22 >seq1129 Length=1508174 Score = 143 bits (158), Expect = 5e-31 Identities = 268/390 (69%), Gaps = 8/390 (2%) Strand=Plus/Minus Query 1586 AATTTCGCATTATGTAGAGTCCAGGCTTTGAGAGCTGAGTTTTCAGCTTTGTCGAGGAAA 1645 |||| ||||| || || ||| | ||||| || ||||| |||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1646 TCTTTATAACTAGATCCCTCGCCTGGATTGCAGAGCACGATTGATGGAAGCCCGCCTTTA 1705 |||||||| | | || || |||||||| || | | ||||||||| || |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1706 ATTTGAACTGGCTTTCCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAATCAAT 1765 ||| |||| || || || || |||||||| |||||| || ||||| |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCCAATCAAA 679276 Query 1766 TCTTTCCAGTGCTTTAGCTTTAGATAATGCGGGCTTACATCATCAATGACGTTGTA--CT 1823 |||||| | ||||| | ||||| ||| || |||||||||| ||||| || || | Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1824 CCACTAAGTTTGAATAAACCCTAGAATTGAAATCTA---GGTGCCCGCTAAGATAATTAT 1880 || | | ||||| | | |||||||||| | || ||| ||| ||||||| Sbjct 679215 GCATCATTGTGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTAT 679158 Query 1881 GTGGGCCTAACGCACGAGCCCACATTGTCTTCCCCGTCCGACTATCGCCCTCGATGATCA 1940 | || | | | || ||| | | || || || | ||||| ||| || ||||| | Sbjct 679157 GACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATTA 679098 Query 1941 AACTTATGGGCCTAACAGGCCGCGCAGCGG 1970 |||| | || ||| | |||| |||| ||| Sbjct 679097 TACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 129 bits (142), Expect = 1e-26 Identities = 177/242 (73%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 1586 AATTTCGCATTATGTAGAGTCCAGGCTTTGAGAGCTGAGTTTTCAGCTTTGTCGAGGAAA 1645 |||| ||||| ||||| |||| ||||||||| ||||| | || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1646 TCTTTATAACTAGATCCCTCGCCTGGATTGCAGAGCACGATTGATGGAAGCCCGCCTTTA 1705 |||||||| | ||||| | | ||| ||| | ||||||||||| | || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1706 ATTTGAACTGGCTTTCCG-TATTTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAATCAA 1764 |||| ||| | |||||| | |||||||| |||||| || ||||| |||||||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1765 TTCTTTCCAGTG----CTTTAGCTTTAGATAATGCGGG-CTTACATCATCAATGACGTTG 1819 ||||||||| || || | ||||| | ||| ||| ||||||||||||||| || Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTA-AGTATGTGGGAGCTACATCATCAATGACATTA 1742489 Query 1820 TA 1821 || Sbjct 1742490 TA 1742491 Score = 84.2 bits (92), Expect = 4e-13 Identities = 288/439 (66%), Gaps = 9/439 (2%) Strand=Plus/Plus Query 2135 TTCTCCTTTATTATTTGCATCGCTGCTTCT-TTGGTCGATGCATTTAACGCCTCTGCTGC 2193 ||||| ||||||||||| | ||||| ||| ||||| || ||| | ||| || || Sbjct 1748873 TTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAATCGCTTCAGCGTA 1748931 Query 2194 AGCGTCATTAGCTGTTTGCTTACCTCCTCTAGCAGATCTCCCGTCGATCTGGAATTCTCC 2253 | || | || ||| ||||| ||| ||| ||||||| || || || || || || | Sbjct 1748932 TACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATC 1748991 Query 2254 CCATACAAGAATATCCCCGTCTTTGTCGACGTAGGACTTGA--CGTCGGAGCTGGACCTA 2311 ||| | | | || || || || || | ||| || || | | || || | || || Sbjct 1748992 CCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTA 1749051 Query 2312 GCTCCTTGATAGTTCCCATGGAACTGTGTTGAACTATGTGGGGAGACCAAGTCGAAGAAT 2371 || |||| || |||||| || | | |||| | ||| | |||||| || Sbjct 1749052 GCATATTGAACATTTGGATGGAATTGAATGGTTCTAT-TAGGGTTTGTATGTCGAAAAAC 1749110 Query 2372 CTTTTATTTTGGCAGTTGTATTTGCCTTCGAACTGGAGCAACACATGTAAATGAGGCTGC 2431 | || ||| |||| | |||| ||| ||||| ||| | ||||| ||||| || | | Sbjct 1749111 CATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGAG-ATTACATGCAAATGTGG-TTC 1749168 Query 2432 CCATCTTCGTGGAGCTCTCGACAGATCTTGACGTATTTCTTATTTGTTGGGGTTTGAAGG 2491 || | ||| || |||| || | || | | |||| |||||| ||| | ||| Sbjct 1749169 CCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGG 1749228 Query 2492 TTTAGTAGTTGGGAAAGTACCTCCTCTTTGGATAGTGAGCAT-TTGGGATAAGTGAGGAA 2550 ||| || || ||| || || ||||| | ||| | ||| |||||| ||||||| || Sbjct 1749229 TTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAA 1749287 Query 2551 ATAATTCTTGGCATTTATT 2569 |||||| ||| ||||||| Sbjct 1749288 ATAATTTTTGCTATTTATT 1749306 >seq1694 Length=789422 Score = 113 bits (124), Expect = 8e-22 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 1586 AATTTCGCATTATGTAGAGTCCAGGCTTTGAGAGCTGAGTTTTCAGCTTTGTCGAGGAAA 1645 |||| ||||| || || ||||| ||||| || ||||| ||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1646 TCTTTATAACTAGATCCCTCGCCTGGATTGCAGAGCACGATTGATGGAAGCCCGCCTTTA 1705 |||||||| | || || |||||||| || | |||||||||| | | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1706 ATTTGAACTGGCTTTCCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAATCAAT 1765 |||||||| | || || || ||||||| |||||| || ||||| ||||||| ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1766 TCTTTCCAGTGCTTTAGCTTTAGATAA-TGCGGGCTTACATCATCAATG 1813 |||||| | ||||| | ||||| ||| || | ||| ||||||||||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-CATCATCAATG 599645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8585288203204