Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015046.1 Length=2680 Score E Sequences producing significant alignments: (Bits) Value seq1129 165 1e-37 seq1694 149 1e-32 seq519 147 4e-32 seq3069 89.7 9e-15 seq2957 82.4 1e-12 >seq1129 Length=1508174 Score = 165 bits (182), Expect = 1e-37 Identities = 179/236 (76%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 1538 AATTTCGCATTATGAAGGGTCCAGTTTTTGAGCGATGCGTTTTCCTCTTTGTCGAGGAAA 1597 |||| ||||| || || ||| | || ||||| | | ||||||||||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1598 TCTTTATAGCTGGCCCCTTCACCTGGATTGCAGAGCACGATTGATGGGATCCCGCCTTTA 1657 |||||||||| || |||||||||||||| || | | ||||||||||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1658 ATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAATTAGC 1717 ||| |||| || || || || |||||||| ||||| ||||||| | ||||||| | Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTT-GCCCCCAATCAAA 679276 Query 1718 TCTTTCCAGTGCTTCATCTTTAGATATTGCGGACTGACATCATCGATGACGTTGTA 1773 |||||| | ||||||||||||| || ||| | |||||||| ||||| || || Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATA 679220 >seq1694 Length=789422 Score = 149 bits (164), Expect = 1e-32 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 1538 AATTTCGCATTATGAAGGGTCCAGTTTTTGAGCGATGCGTTTTCCTCTTTGTCGAGGAAA 1597 |||| ||||| || || ||||| || ||||| | | |||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1598 TCTTTATAGCTGGCCCCTTCACCTGGATTGCAGAGCACGATTGATGGGATCCCGCCTTTA 1657 ||||||||| || |||||||||||||| || | |||||||||| ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1658 ATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAATTAGC 1717 |||||||| | || || || ||||||| ||||| |||||||| ||||||| | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1718 TCTTTCCAGTGCTTCATCTTT-AGATATTGCGGACTGACATCATCGATG 1765 |||||| | |||||||||||| || | || | ||| ||||||| ||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-CATCATCAATG 599645 Score = 100 bits (110), Expect = 5e-18 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1544 GCATTATGAAGGGTCCAGTTTTTGAGCGATGCGTTTTCCTCTTTGTCGAGGAAATCTTTA 1603 |||| || || | ||| || || || | | ||||||||||| || | ||||||| | Sbjct 596270 GCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTG 596211 Query 1604 TAGCTGGCCCCTTCACCTGGATTGCAGAGCACGATTGATGGGATCCCGCCTTTAATTTGA 1663 ||| || ||||||| | ||||||| | |||||||||||||| || |||||||||| | Sbjct 596210 TAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTA 596151 Query 1664 ACTGGCTTTCCGTATTTGCAATT 1686 || || || || || |||||||| Sbjct 596150 ACGGGTTTCCCATACTTGCAATT 596128 Score = 78.8 bits (86), Expect = 2e-11 Identities = 135/186 (73%), Gaps = 9/186 (5%) Strand=Plus/Minus Query 1251 TTGTGGTTGAACCGGATTTGGATGTGGTAGATCCTCGTG-TTGGTGTAGATTA-TGTCCT 1308 |||| ||||||| | |||||||| | || | ||||| ||| ||| || | |||||| Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTC-TATAATGTCGTGGTTGTTGTTGAATGGTGTCCT 596583 Query 1309 CTACGCTGGT--TATCTTGAAATACAGGGGATTTGTTACCTCCCAGATATAGACGCCACT 1366 ||| | || |||||||||||| || |||||| ||| ||||| ||| |||||| | Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1367 CTCTGC-TTGATGCGCAGTGATGAT-TTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTT 1424 | ||| || | |||||| ||| |||||| |||| ||||||| ||| ||||| || Sbjct 596522 GT-TGCACCGAGCCACAGTGA-GATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATT 596465 Query 1425 GATGTG 1430 || || Sbjct 596464 AATATG 596459 >seq519 Length=3254320 Score = 147 bits (162), Expect = 4e-32 Identities = 179/241 (74%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1538 AATTTCGCATTATGAAGGGTCCAGTTTTTGAGCGATGCGTTTTCCTCTTTGTCGAGGAAA 1597 |||| ||||| || || |||| || ||||| | | | |||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1598 TCTTTATAGCTGGCCCCTTCACCTGGATTGCAGAGCACGATTGATGGGATCCCGCCTTTA 1657 ||||||||| || || |||| | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1658 ATTTGAACTGGCTTTCCG-TATTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAATTAG 1716 |||| ||| | |||||| | |||||||| ||||| |||||||| ||||||| | Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1717 CTCTTTCCAGTG----CTTCATCTTTAGATATTGCGGACTGACATCATCGATGACGTTGT 1772 |||||||| || || |||||||| ||| ||| |||||||| ||||| || | Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1773 A 1773 | Sbjct 1742491 A 1742491 Score = 84.2 bits (92), Expect = 4e-13 Identities = 177/250 (71%), Gaps = 12/250 (5%) Strand=Plus/Plus Query 1188 GTCAATGTCGTCCAAA-CTTGGAAATTGAGAAATGCCTTGTGGAGATCCAATGCTTTCCT 1246 || ||||||||||| | |||| ||| | | ||||||| || | | | | |||||| Sbjct 1741823 GTTAATGTCGTCCAGATCTTGAAAAAT-ATCTATGCCTTATGAAATTGTAGGGTTTTCCT 1741881 Query 1247 CAGGTTGTGGTTGAACCGGATTTGGATGTGGTAGATCCTCGTG-TTGGTGT-AGATTATG 1304 || |||| |||||| | || ||||| | ||| ||||| ||| ||| | ||| | Sbjct 1741882 GAGATTGTAGTTGAAATGTATCTGGATTTCTATGATG-TCGTGGTTGTTGTTAAATTGTC 1741940 Query 1305 TCCTCTACGCTGGT--TATCTTGAAATACAGGGGATTTGTTACCTCCCAGATATAGACGC 1362 |||||| | || |||||||||||| |||| ||||| || ||||| ||| || | Sbjct 1741941 TCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACAC 1742000 Query 1363 CACTCTCTGC-TTGATGCGCAGTGATGAT-TTCCCCTGTGCGTGAATCCATGGTTGCTGC 1420 || | | ||| ||| || ||||| ||| |||||| ||| | ||||||| ||| || | Sbjct 1742001 CATTGT-TGCACTGA-GCCTAGTGA-GATGTTCCCCGGTGTGAAAATCCATCGTTCCTAC 1742057 Query 1421 AGTTGATGTG 1430 |||| ||||| Sbjct 1742058 AGTTAATGTG 1742067 >seq3069 Length=10854949 Score = 89.7 bits (98), Expect = 9e-15 Identities = 175/250 (70%), Gaps = 13/250 (5%) Strand=Plus/Plus Query 1188 GTCAATGTCGTCCA-AACTTGGAAATTGAGAAATGCCTTGTGGAGATCCAATGCTTTCCT 1246 || ||||||||||| | |||| ||| | | ||||||| || | | ||| |||||||| Sbjct 3754354 GTTAATGTCGTCCAGATCTTGAAAAAT-ATCCATGCCTTCTGAAATTTCAAGGCTTTCCT 3754412 Query 1247 CAGGTTGTGGTTGAACCGGATTTGGATGTGGTAGATCCTCGTGTTGGT--GTAGATTATG 1304 |||||| |||||| | || ||||| | ||| ||||| | || || || | Sbjct 3754413 GAGGTTGAAGTTGAATTGTATCTGGATCTCTATGAT-GTCGTGGTCGTTGTTAAATGGTC 3754471 Query 1305 TCCTCTACGCTG----GTTATCTTGAAATACAGGGGATTTGTTACCTCCCAGATATAGAC 1360 |||||| | || |||| ||||||||| |||||||||| ||| || || ||||| || Sbjct 3754472 TCCTCT--GGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCAAATATATAC 3754529 Query 1361 GCCACTCTCTGC-TTGATGCGCAGTGATGATTTCCCCTGTGCGTGAATCCATGGTTGCTG 1419 | || | | ||| | | || ||||| ||| ||| ||||| ||| ||| ||| || Sbjct 3754530 GTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACATTGTTCTTG 3754588 Query 1420 CAGTTGATGT 1429 || || |||| Sbjct 3754589 CAATTAATGT 3754598 >seq2957 Length=4215098 Score = 82.4 bits (90), Expect = 1e-12 Identities = 192/281 (68%), Gaps = 14/281 (5%) Strand=Plus/Plus Query 1188 GTCAATGTCGTCCAAA-CTTGGAAATTGAGAAATGCCTTGTGGAGATCCAATGCTTTCCT 1246 ||||| |||||||||| | || ||| | | ||||| | | | || |||||| | Sbjct 1238703 GTCAACGTCGTCCAAATCATGAAAAATCC---ACGCCTTCTAAAATTGTAAGGCTTTCTT 1238759 Query 1247 CAGGTTGTGGTTGAACCGGATTTGGATGTGGTAGATCCTCGTGTTGGTGTAGATT-ATGT 1305 ||||||| ||||||| | || ||||||| ||| | ||| ||| || | || | Sbjct 1238760 GAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTGTTGAATGATCT 1238819 Query 1306 CCTCTACGCTG----GTTATCTTGAAATACAGGGGATTTGTTACCTCCCAGATATAGACG 1361 ||| | | || |||||||||||||| || |||||| ||| ||| || |||| || Sbjct 1238820 CCTTT--GGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATATACT 1238877 Query 1362 CCACTCTCTGC-TTGATGCGCAGTGATGATTTCCCCTGTGCGTGAATCCATGGTTGCTGC 1420 || | | ||| ||| |||| ||| | || | | ||||| ||||||| ||| | Sbjct 1238878 TCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATTGTTCATAT 1238936 Query 1421 AGTTGATGTGGACGT-ATATTGAGCAGCCGCAGTTAAGATC 1460 |||| ||||| | || |||| | ||| || || || ||||| Sbjct 1238937 AGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATC 1238977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8466892503048