Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015124.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq519 122 2e-24 seq3069 95.1 2e-16 seq1129 93.3 7e-16 seq1694 84.2 4e-13 >seq519 Length=3254320 Score = 122 bits (134), Expect = 2e-24 Identities = 251/366 (69%), Gaps = 12/366 (3%) Strand=Plus/Plus Query 2218 ACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTC 2277 || ||| ||||| ||||||||||| || || ||| | | ||| | |||||| || Sbjct 1743138 ACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTC 1743197 Query 2278 TTTTTCCATGTATGTTTTAACAT---CTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATG 2334 ||||| ||||||| |||||||| ||||| ||||| |||| || |||| Sbjct 1743198 CTTTTCGATGTATGATTTAACATTAGAGGTTGA---TTTAGAAAATTGAACATTTTGATG 1743254 Query 2335 GAAATGTGCTGACCTTGTTTGG--GATATGAGGTCGAAGAATCTTTGATTTCTGCATTGG 2392 ||| || || |||| || ||||| | ||| || |||| |||||| |||| | Sbjct 1743255 GAATTG-AATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAG 1743312 Query 2393 AACTTTCCTTCGAATTGGATGAGGACATGCAAGTGAGGAGACCCATCTTCGTGTAATTCC 2452 || || ||| ||| ||||| || |||||||| || || ||| | ||||| ||| Sbjct 1743313 AATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCT 1743372 Query 2453 CTGCAGATTCGAATGAATAATTTATTTGTTGGGGTTTCTAAGGC-TTTAATTTGGGAAAG 2511 |||| | || |||||| | ||||| | |||| | |||| ||| | || ||| Sbjct 1743373 TTGCACACTCTTATGAATTTTAGATTTG-TAGGGTAGTTGAGGCTTTTGAGATGATGAAG 1743431 Query 2512 TGCTTCTTCTTTGGTGAGAGAACAGTGTGGGTATGTGAGGAAATAGTTTTTGGCATTTAT 2571 || || ||||| ||||| ||||| |||| | |||||||||| |||||| |||||| Sbjct 1743432 AGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTAT 1743491 Query 2572 TCTGAA 2577 ||| || Sbjct 1743492 TCTAAA 1743497 Score = 96.9 bits (106), Expect = 6e-17 Identities = 352/535 (66%), Gaps = 22/535 (4%) Strand=Plus/Plus Query 2066 ATTGGAGGAGTAAAAATCCTATCTAAATTACTATTTAAATTATGGAATTGTAAAACAAAA 2125 ||| |||| | || || | | | |||||| ||| |||||||| |||||| || ||| Sbjct 1748801 ATTAGAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA 1748860 Query 2126 -TCTTTAGGAGCTTTCTCCCTTAATATATTGAGGGCCGATGCT-TTGGACCCTGAATTGA 2183 ||||| || ||||||| ||| ||| | | || | || |||| | | |||| | Sbjct 1748861 CTCTTTGGGT-CTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCAT-AATTAA 1748918 Query 2184 TTGCCTCGGCATATGCGTCGTTGGCAG-ATTGGCA-ACCTCCTCTAGCCGATCTTCCATC 2241 | || || || ||| | || || | ||| | || ||| ||| | ||||||||||| Sbjct 1748919 TCGCTTCAGCGTATACATC--TGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATC 1748976 Query 2242 GATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGTTTTAA--CA 2299 || || ||| | | ||| | |||||| || ||||| ||||||| ||||| || Sbjct 1748977 AATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCA 1749036 Query 2300 TC---TGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTGTTTGG 2356 || ||||| |||||| |||| || |||||||| || || | || || Sbjct 1749037 TCAAAGGTTGA---TTTAGCATATTGAACATTTGGATGGAATTG-AATGGTTCTATTAGG 1749092 Query 2357 GATATGAGGTCGAAGAATCTTTGATTTCTGCATTGGAACTTTCCTTCGAATTGGATGAGG 2416 | | | |||||| || | |||||| |||| ||| || ||| ||| | || || Sbjct 1749093 GTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATT 1749151 Query 2417 ACATGCAAGTGAGGAGACCCATCTTCGTGTAATTCCCTGCAGATTCGAATGAATAATTTA 2476 |||||||| || || ||| | ||||| ||| ||||| | | |||||| | Sbjct 1749152 ACATGCAAATGTGG-TTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAAGA 1749210 Query 2477 TTTGTTGGGGTTTCTAAGGCTTTAATTTGGGAAAGTGCTTCTTCTTTGGTGAGAGAACAG 2536 ||||| ||| | | | ||| | || ||| | || ||||| ||||| |||| Sbjct 1749211 TTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAAACAT 1749270 Query 2537 TGTGGGTATGTGAGGAAATAGTTTTTGGCATTTATTCTGAA---TTTATTGGGAG 2588 |||| | ||||| ||||| |||||| ||||||||| || |||||||||| Sbjct 1749271 CTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAACATGTTATTGGGAG 1749325 >seq3069 Length=10854949 Score = 95.1 bits (104), Expect = 2e-16 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 1283 CAATGCTTTCCTCAGGTTGTAATTGAATTGGACTTGTATTGTGATGATGTCGTGGTTCGT 1342 ||| |||||||| |||||| | |||||||| | || || ||||||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1343 CAGAAATGGTCTCTCGTCGTGGCTGGTTATCTTGAAATATAGGGGATTTTTGACCGTCCA 1402 |||||||||| | ||| | |||| ||||||||||||||||||| || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1403 GATATATACGCCACTCTCTGC-TTGAGCTGCAGTGATAGCTTCCCCTGTGCGAGAATCCA 1461 ||||||||| || | | ||| | ||| | ||||| | || ||| |||||| ||| || Sbjct 3754521 AATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1462 T 1462 | Sbjct 3754580 T 3754580 >seq1129 Length=1508174 Score = 93.3 bits (102), Expect = 7e-16 Identities = 277/422 (66%), Gaps = 29/422 (7%) Strand=Plus/Minus Query 2177 GAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTT 2236 ||||| || || | ||||||| | || | | ||| || ||| ||||| ||||| Sbjct 678803 GAATTAATCGCTTTGGCATATACATCTGCAACTGTTTGCTTACATCCCCTAGCATATCTT 678744 Query 2237 CCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCG-----TCTTTTTCCATGTATG 2291 || || || || ||| | || ||| | ||||||| || ||||| ||||||| Sbjct 678743 CCTTCAATTTGAAAATCACCCCAATCTACATAGTCTCCGATCCCTCCTTTTCAATGTATG 678684 Query 2292 TTTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTTG 2351 ||||| ||| || ||| || | |||| || |||||| ||| || || Sbjct 678683 ATTTAATATCATTT-AGC----AGAT---TGAACATTTGGATGGTTCTGTT---ACTGTG 678635 Query 2352 TTTGGGATATGAGGTCGAAGAATCTTTGATTTCTGCATTGGAACTTTCCTTCGAATTGGA 2411 || |||| ||||| || |||||||| ||||| ||| || ||| ||| |||| Sbjct 678634 TTG----TATG---TCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGA 678582 Query 2412 TGAGGACATGCAAGTGAGGA-----GACCCATCTTCGTGTAATTCCCTGCAGATTCGAAT 2466 || || ||||| || || | ||| | | | ||| || |||| |||| || Sbjct 678581 GAAGTACGTGCAAATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTAT 678522 Query 2467 GAATAATTTATTTGTTGGGGTTTCTAAGGCTTTAATTTGGGAAAGTGCTTCTTCTTTGGT 2526 ||| | |||||| ||| | | ||| ||| | || ||| || || ||||| | Sbjct 678521 GAAGTTTAGATTTGTAGGGTAGT-TGAGGTTTTGAGATGATGAAGAGCATCATCTTTTGA 678463 Query 2527 GAGAGAACAGTGTGGGTATGTGAGGAAATAGTTTTTGGCATTTATTCTGAATTTATTGGG 2586 ||||||||| || | | ||||||||||||||||| ||||||||| ||| | ||||| Sbjct 678462 GAGAGAACATCTTGAGAAACTGAGGAAATAGTTTTTGCTATTTATTCTAAATATGTTGGG 678403 Query 2587 AG 2588 || Sbjct 678402 AG 678401 >seq1694 Length=789422 Score = 84.2 bits (92), Expect = 4e-13 Identities = 249/376 (66%), Gaps = 26/376 (7%) Strand=Plus/Minus Query 2225 CTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCC 2284 ||||| |||||||||||||| || ||| | || ||| | |||||| || ||||| Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2285 ATGTATGTTTTAACATCTGTTGA-GCT--TTTAGCTCCCTGAATGTTCGGATGGAAATGT 2341 ||||||| |||||||| | || ||| ||| | ||||| | |||||||| || Sbjct 599197 ATGTATGATTTAACAT---TAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGA 599141 Query 2342 GCTGACCTTGTTTGGGATATG--AGGTCGAAGAATCTTTGATTTCTGCATTGGAACTTTC 2399 | | |||| ||| | || | |||||| || ||||||| | || ||| |||| Sbjct 599140 ATAGTTC-TGTTAGGG-TGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTC 599084 Query 2400 CTTCGAATTGGATGAGGACATGCAAGTGAGGAGACCCATCTTCGTGTAATTCCCTGCAGA 2459 || ||||| || || || || || || || ||| | || |||||| | ||| | Sbjct 599083 CTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACA 599024 Query 2460 TTCGAATGAAT----AATTTAT----TTGTTGGGGTTTCTAAGGCTTTAATTTGGGAAAG 2511 || |||||| |||||| | |||||||||| ||| | || ||| Sbjct 599023 CTCTTATGAATTTGAGATTTATAGCGTAGTTGGGGTTT-------TTTGAAATGATGAAG 598971 Query 2512 TGCTTCTTCTTTGGTGAGAGAACAGTGTGGGTATGTGAGGAAATAGTTTTTGGCATTTAT 2571 | || ||||| |||||| || ||| | ||| ||||||||||| | |||||| Sbjct 598970 AACATCATCTTTTAAGAGAGAGCATCTTGGTAAAGTGTGGAAATAGTTTAAGCTATTTAT 598911 Query 2572 TCTGAATTTATTGGGA 2587 ||| || || |||||| Sbjct 598910 TCTAAACTTGTTGGGA 598895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8658885530328