Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015317.1 Length=2782 Score E Sequences producing significant alignments: (Bits) Value seq519 111 3e-21 seq1694 98.7 2e-17 seq1129 95.1 2e-16 >seq519 Length=3254320 Score = 111 bits (122), Expect = 3e-21 Identities = 250/368 (68%), Gaps = 6/368 (2%) Strand=Plus/Plus Query 2238 TGCTGGCCTCCTCGAGCAGATCTGCCGTCGACCTGGAATTCACCCCATTCAATTGTGTCA 2297 |||| | ||| | ||||||||| || || | || || ||| | || || | ||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2298 CCGTCCTTATCGACATAGGACTTGACATCGGAGCTGGATTTAGCTCTCTGGATATTGGGG 2357 || ||||| |||| || || || |||| ||| | ||||||| || | ||| | Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2358 TGAAAGTGAGCCGACCT-TGATGGTGATACAAGGTCGAAGAATCTCTGATTCGTGCATTG 2416 || || ||| | || | | ||||||| | | || || |||| ||||| ||||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATATATG-TCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2417 GTAGTTCCCTTCGAACTGCAATAGCACGTGGAGATGAGGTTCCCCATTTTCATGCAGCTC 2476 | | || ||| ||| || | || || || | ||| |||||||| || || || || Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2477 TCTGCATATTTTTATGAATTTTTTGTTGGTTGGGGTGTTGAGGTTACGAAGCTGGTCGAG 2536 | |||| | | ||||||||||| || || ||| ||||||| | || || | || Sbjct 1743372 TTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAG 1743431 Query 2537 AGCTTCTTCTTTGGTGAGAGAGCAT-TGGGGATATGTGAGGAAATAGTTTTTTGCT-TTT 2594 ||| || ||||| ||||| || ||| | |||| | |||||||||| | |||||||| ||| Sbjct 1743432 AGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAAT-GATTTTTGCTATTT 1743489 Query 2595 ATATTAAA 2602 || |||| Sbjct 1743490 ATTCTAAA 1743497 >seq1694 Length=789422 Score = 98.7 bits (108), Expect = 2e-17 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 2390 GTCGAAGAATCTCTGATTCGTGCATTGGTAGTTCCCTTCGAACTGCAATAGCACGTGGAG 2449 |||||| || | ||||| ||||||| | | |||||| |||||| | || ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2450 ATGAGGTTCCCCATTTTCATGCAGCTCTCTGCATATTTTTATGAATTTTTTGTTGGTTGG 2509 ||| |||||||| | ||||| |||||||| | |||||||||| || || | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2510 GGTGTTGAGGTTACGAAGCTGGTCGAGAGCTTCTTCTTTGGTGAGAGAGCAT-TGGGGAT 2568 ||||||||| || || | ||| | || ||||| | |||||| ||| | |||| Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAA 588070 Query 2569 ATGTGAGGAAATAGTTTTTTGCT-TTTATATTAAA 2602 | |||||||||||| |||| ||| ||||| |||| Sbjct 588069 A-GTGAGGAAATAG-TTTTAGCTATTTATTCTAAA 588037 >seq1129 Length=1508174 Score = 95.1 bits (104), Expect = 2e-16 Identities = 158/220 (72%), Gaps = 10/220 (5%) Strand=Plus/Minus Query 2390 GTCGAAGAATCTCTGATTCGTGCATTGGTAGTTCCCTTCGAACTGCAATAGCACGTGGAG 2449 |||||| || || ||||| |||||| | | |||||| |||||| | || ||||| | Sbjct 678628 GTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 678569 Query 2450 ATGAGGTTCCCCATT---TTCATGC--AGCTCTCTGCATATTTTTATGAATTTTTTGTTG 2504 ||| |||||||| || ||| || | | |||| ||| ||||||| ||| || Sbjct 678568 ATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTT 678509 Query 2505 GTTGGGGTGTTGAGGTTACGAAGCTGGTCGAGAGCTTCTTCTTTGGTGAGAGAGCAT-TG 2563 || ||| ||||||||| || | || | ||||| || ||||| | |||||| ||| | Sbjct 678508 GTAGGGTAGTTGAGGTTTTGA-GATGATGAAGAGCATCATCTTTTGAGAGAGAACATCTT 678450 Query 2564 GGGATATGTGAGGAAATAGTTTTTTGCT-TTTATATTAAA 2602 | || | |||||||||||| ||||||| ||||| |||| Sbjct 678449 GAGAAAC-TGAGGAAATAGT-TTTTGCTATTTATTCTAAA 678412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8790071376390