Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015324.1 Length=2824 Score E Sequences producing significant alignments: (Bits) Value seq1694 116 7e-23 seq519 113 8e-22 seq1129 91.5 3e-15 >seq1694 Length=789422 Score = 116 bits (128), Expect = 7e-23 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 2288 CTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGT 2347 |||| |||| || || |||||||||||||| |||| ||||||| |||||| || | || Sbjct 599274 CTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGT 599215 Query 2348 AATCACCGTCCTTCTCGATGTAGGATTTGACATCGGATGATGATTTAGCTCCCTGGAAAT 2407 | || || ||||| || ||||| ||||| |||| || | |||||| | ||| | | Sbjct 599214 AGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACAC 599155 Query 2408 TTGGATGGAATTGGGTGGAGCTGTTGGGGTGTTGCAGGTCGAAA 2451 ||||||||||||| | | ||||| |||||| | | ||||||| Sbjct 599154 TTGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAAA 599111 >seq519 Length=3254320 Score = 113 bits (124), Expect = 8e-22 Identities = 208/297 (70%), Gaps = 11/297 (4%) Strand=Plus/Plus Query 2161 ATTCTATCTAAATTACTACGTAAATTATGATATTGAAAAATAAAA-TCTATAGGAAGTTT 2219 |||| | | |||||| | |||||||||||||| | ||| ||| ||| | || ||| Sbjct 1748816 ATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCTTTGGGTC-TTT 1748874 Query 2220 CTCCCTAATTATTTGTAATGCTGCTTCAGCAGAGCCTGCGT--TTAAG-GCCTCTGCTGC 2276 ||| | ||||||||||||||||| || | ||| | |||| || || || Sbjct 1748875 CTCTTTTATTATTTGTAATGCTGCATCTCTTGG---TGCATAATTAATCGCTTCAGCGTA 1748931 Query 2277 TGCATCATTAGCTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAAGTACC 2336 | |||| | || | | || || ||| ||| |||||||||| || | ||||||| | | Sbjct 1748932 TACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATC 1748991 Query 2337 CCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGATTTGAC--ATCGGATGATGATTTA 2394 ||| || | || || || ||||| || ||||| ||||| || ||| | | ||||||| Sbjct 1748992 CCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTA 1749051 Query 2395 GCTCCCTGGAAATTTGGATGGAATTGGGTGGAGCTGTTGGGGTGTTGCAGGTCGAAA 2451 || || | ||||||||||||||| ||| || || |||| ||| | ||||||| Sbjct 1749052 GCATATTGAACATTTGGATGGAATTGAATGGTTCTATTAGGGT-TTGTATGTCGAAA 1749107 Score = 107 bits (118), Expect = 3e-20 Identities = 190/272 (70%), Gaps = 4/272 (1%) Strand=Plus/Plus Query 2182 AAATTATGATATTGAAAAATAAAA-TCTATAGGAAGTTTCTCCCTAATTATTTGTAATGC 2240 |||||||||||||| | | | ||| ||| | || || ||| | ||||||||||||| Sbjct 1743022 AAATTATGATATTGTAGAGTGAAACTCTTTGGGTCATT-CTCTTTTATTATTTGTAATGT 1743080 Query 2241 TGCTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGC-TGCATCATTAGCTGTCTGCTGAC 2299 || || || ||| |||| || | || | |||| | || | |||| || Sbjct 1743081 TGAATCTCTTGA-CCTAGAATTAATCGCTTTAGTGTATACATCTACAACTATTTGCTTAC 1743139 Query 2300 CTCCTCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGTAATCACCGTCCT 2359 ||| |||||||||||||| || | ||||||| | | || || | ||| || || |||| Sbjct 1743140 ATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCT 1743199 Query 2360 TCTCGATGTAGGATTTGACATCGGATGATGATTTAGCTCCCTGGAAATTTGGATGGAATT 2419 | |||||||| ||||| |||| || | |||||||| || | |||| ||||||||| Sbjct 1743200 TTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATT 1743259 Query 2420 GGGTGGAGCTGTTGGGGTGTTGCAGGTCGAAA 2451 | ||| ||||| ||||| | | ||| ||| Sbjct 1743260 GAATGGTTCTGTTAGGGTGATATATGTCAAAA 1743291 >seq1129 Length=1508174 Score = 91.5 bits (100), Expect = 3e-15 Identities = 183/269 (68%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 2184 ATTATGATATTGAAAAATAAAA-TCTATAGGAAGTTTCTCCCTAATTATTTGTAATGCTG 2242 ||||||| |||| | ||| ||| ||| | || |||| | ||||||||||||| || Sbjct 695371 ATTATGAGATTGTAGAATGAAACTCT-TCGGGTCATTCTATTTTATTATTTGTAATGTTG 695313 Query 2243 CTTCAGCAGAGCCTGCGTTTAAGGCCTCTGCTGCTGCATCATTAGCTGTCTGCTGACCTC 2302 | || ||| | | || | || || || | ||| | ||| |||| || || Sbjct 695312 CATCTCTAGACCAAGAATTAATCGCTTCAGCGTATACATATGCAATTGTTTGCTTACATC 695253 Query 2303 CTCTAGCAGATCTTCCGTCGACTTGAAAAGTACCCCAGTCGATGTAATCACCGTCCTTCT 2362 |||||||||||| || | || |||| ||| || || | ||| || || ||||| | Sbjct 695252 TCCTAGCAGATCTTTGATCAATTTCAAAATCACCTCAATCTACGTACTCTCCCTCCTTTT 695193 Query 2363 CGATGTAGGATTTGACATCGGATGATGATTTAGCTCCCTGGAAATTTGGATGGAATTGGG 2422 | ||||| || || ||||| || | | ||||||| || | ||||| |||||||| | Sbjct 695192 CAATGTACGAGTTAACATCAGAGGCTAATTTAGCAGATTGAACATTTGTATGGAATTAGA 695133 Query 2423 TGGAGCTGTTGGGGTGTTGCAGGTCGAAA 2451 | | |||| ||||||| | ||||||| Sbjct 695132 TAGTTTTGTTAGGGTGTTTTATGTCGAAA 695104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8924466351930