Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015397.1 Length=2566 Score E Sequences producing significant alignments: (Bits) Value seq1129 131 3e-27 seq1694 120 5e-24 seq519 116 6e-23 >seq1129 Length=1508174 Score = 131 bits (144), Expect = 3e-27 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 1522 TGAGTGCAGAATTCTCCTCTTTCTCGAGGAAGTCTTTATAGCTGGACCCTTCACCAGGAT 1581 |||| ||| ||| |||||||| || ||||| |||||||||| | |||||||| |||| Sbjct 679426 TGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGAT 679367 Query 1582 TGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATATTTGCAGT 1641 | || | | ||||||||||| ||||||||| |||| || || ||||| ||||| | Sbjct 679366 TACACAATAAGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAAT 679307 Query 1642 TGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTCCAGTGCTTTAGCTTTAGGTATT 1701 | |||||||| ||| || | |||||| | |||||| | ||||| | ||||| ||| Sbjct 679306 TACTTTGCCAATCT-TTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTA-A 679249 Query 1702 GCGGTGGCAACGTCATCAATGACGTTGTATG 1732 | || | || ||||| ||||| || |||| Sbjct 679248 GTGGGAGTTACATCATCTATGACATTATATG 679218 >seq1694 Length=789422 Score = 120 bits (132), Expect = 5e-24 Identities = 161/223 (72%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 1500 GCATTGTGAAGGGTCCAGGCTCTGAGTGCAGAATTCTCCTCTTTCTCGAGGAAGTCTTTA 1559 ||||| || || ||||| |||| || ||| ||||||| || |||| |||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1560 TAGCTGGACCCTTCACCAGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGA 1619 ||| | |||||||| ||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1620 ACAGGCTTTCCATATTTGCAGTTGCTTTGCCAGTCTCGTTGGGCCCCAACGAGCTCTTTC 1679 ||| | || ||||| ||||| | |||||||| ||| ||| |||||| | |||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1680 CAGTGCTTTAGCTTTAGGTATTGCGGTGGCAACGTCATCAATG 1722 | ||||| | ||||| ||| | || || | ||||||||| Sbjct 599686 TATTGCTTCATCTTTAAGTA-AGTGGGAGCTGCATCATCAATG 599645 Score = 95.1 bits (104), Expect = 2e-16 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 1532 ATTCTCCTCTTTCTCGAGGAAGTCTTTATAGCTGGACCCTTCACCAGGATTGCAAAGCAC 1591 ||| |||||||| || | ||| ||| | ||| | ||||||| ||||||| | || Sbjct 596238 ATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATAC 596179 Query 1592 GATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCCA 1651 |||||||||||| || |||||||||| ||| || || ||||| ||||| || |||||||| Sbjct 596178 GATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 >seq519 Length=3254320 Score = 116 bits (128), Expect = 6e-23 Identities = 152/206 (74%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 1532 ATTCTCCTCTTTCTCGAGGAAGTCTTTATAGC-TGGACCCTTCACCAGGATTGCAAAGCA 1590 ||| ||||| || || ||||| ||||||||| || ||||| ||| ||| ||| | | Sbjct 1742290 ATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT-CACTTAGATAGCACAATA 1742348 Query 1591 CGATTGATGGGATACCGCCTTTAATTTGAACAGGCTTTCCATATTTGCAGTTGCTTTGCC 1650 ||||||||||||| || |||||||||| ||| | || | | | ||||| || ||||||| Sbjct 1742349 CGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCC 1742408 Query 1651 AGTCTCGTTGGGCCCCAACGAGCTCTTTCCAGTG----CTTTAGCTTTAGGTATTGCGGT 1706 | ||| ||| |||||| | |||||||| || || | ||||| ||| || || Sbjct 1742409 AATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTA-TGTGGG 1742467 Query 1707 GGCAACGTCATCAATGACGTTGTATG 1732 || || ||||||||||| || |||| Sbjct 1742468 AGCTACATCATCAATGACATTATATG 1742493 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8102105751216