Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015487.1 Length=2641 Score E Sequences producing significant alignments: (Bits) Value seq1129 140 5e-30 seq519 136 7e-29 seq1694 129 1e-26 >seq1129 Length=1508174 Score = 140 bits (154), Expect = 5e-30 Identities = 152/198 (77%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 1536 TTTTCATCTTTGTTGAGGAAATCTTTATAGCTAGCACCCTCACCAGGATTGCAAAGCACG 1595 ||||| ||||| | |||||||||||||||| ||||| ||||| ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1596 ATTGATGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGATTGCCAG 1655 |||||||||| ||||||||| |||| || || || ||||| ||||| |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1656 TCCTTTTGGGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTT-AGATAGTGCGGTGCGAC 1714 | ||||| | |||||||||| |||||| | ||||| | |||| || |||| || | || Sbjct 679295 T-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTAC 679238 Query 1715 GTCATCAATGACGTTATA 1732 ||||| ||||| ||||| Sbjct 679237 ATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 136 bits (150), Expect = 7e-29 Identities = 153/202 (76%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 1536 TTTTCATCTTTGTTGAGGAAATCTTTATAGCTAGCACCCTCACCAGGATTGCAAAGCACG 1595 ||||| || || | ||||||||||||||| |||||||||| ||| ||| | ||| Sbjct 1742291 TTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACG 1742350 Query 1596 ATTGATGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGATTGCCAG 1655 ||||||||||| || |||||||||| ||| | || | |||| ||||| |||||| Sbjct 1742351 ATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAA 1742410 Query 1656 TCCTTTTGGGCCCCAATCAATTCTTTCCAGTG----CTTTAGCTTTAGATA-GTGCGGTG 1710 || ||||| ||||||||||||||||||| || || | ||||| || ||| || | Sbjct 1742411 TCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAG 1742469 Query 1711 CGACGTCATCAATGACGTTATA 1732 | || ||||||||||| ||||| Sbjct 1742470 CTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 129 bits (142), Expect = 1e-26 Identities = 168/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1503 GCATTCTTGATGGTCCAGTTCCTCAATGATGCGTTTTCATCTTTGTTGAGGAAATCTTTA 1562 ||||| | || ||||| ||| | | | | ||||| |||| | ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1563 TAGCTAGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCGCCTTTAATTTGA 1622 ||| ||||| ||||| ||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1623 ACTGGCTTGCCGTACTTACAATTTGATTGCCAGTCCTTTTGGGCCCCAATCAATTCTTTC 1682 || | || || ||||| |||| |||||| || ||||| ||||||| ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1683 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACGTCATCAATGACGTTAT 1731 | ||||| | |||| || |||| || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 89.7 bits (98), Expect = 9e-15 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1536 TTTTCATCTTTGTTGAGGAAATCTTTATAGCTAGCACCCTCACCAGGATTGCAAAGCACG 1595 ||||| ||||| | | ||||||| | ||| ||||| |||| ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1596 ATTGATGGGATCCCGCCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGATTGCCA 1654 ||||||||||| || |||||||||| ||| || || || ||||| ||||| |||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8342097035316