Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015488.1 Length=2611 Score E Sequences producing significant alignments: (Bits) Value seq519 116 6e-23 seq1129 96.9 6e-17 seq1694 84.2 4e-13 >seq519 Length=3254320 Score = 116 bits (128), Expect = 6e-23 Identities = 247/364 (68%), Gaps = 10/364 (3%) Strand=Plus/Plus Query 2094 TTGCTGACCTCCTCTAGCAGATCTGCCGTCGATCTGAAATTCTCCCCATTCAATTGTA-T 2152 ||||| || ||| ||||||||||| || || || ||||| || | || || | ||| | Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTA-CGTAGT 1743190 Query 2153 CGCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGACTTAGCTCCCTGAATGTTCG 2212 | || ||||| |||||||| || || || | ||| |||| |||| |||| || Sbjct 1743191 CTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTT 1743250 Query 2213 GATGGAAATGTGCTGACCTGGTTGGGGAAACCAAGTCGAAGAATCTGTTATTCGTGCACT 2272 ||||||| || | ||| | ||| | | ||| || |||| | ||| ||||| Sbjct 1743251 GATGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2273 GGTATTTCCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGGAGTT 2332 | |||| ||| ||| ||||| || || || | ||| |||||||| || || |||| Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2333 CCGTGCATATTTTGATGAACTT----CTTGTTAACTGGAGTTGATAGGTTTTGCAATTGG 2388 | |||| | | | ||||| || |||| | | ||||| ||| ||| | || Sbjct 1743371 CTTTGCACACTCTTATGAATTTTAGATTTGT--AGGGTAGTTG--AGGCTTTTGAGATGA 1743426 Query 2389 GAAAGAGCTTCTTCTTTTGTTAGAGAGCATTTGGGGTATGTGAGGAAATAGTTTTTGGCA 2448 |||||| || |||||||| || || ||| | ||| | |||||||||| |||||| | Sbjct 1743427 TGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTA 1743486 Query 2449 TTTA 2452 |||| Sbjct 1743487 TTTA 1743490 >seq1129 Length=1508174 Score = 96.9 bits (106), Expect = 6e-17 Identities = 325/500 (65%), Gaps = 42/500 (8%) Strand=Plus/Minus Query 1972 ATGTTGGACACCAGATTGTGATATTGAAGGACGAAATGTTTAGGTTGTTGCTCTTTAATA 2031 || ||||| | ||||| |||||||| || | |||| || || | || |||||| || Sbjct 678895 ATATTGGAAATTAGATTATGATATTGTAGAATGAAACTCTTTGGGTCTTTCTCTTTTATT 678836 Query 2032 ATCTGCA-TAGCCTCTT----CTGCAGATTCTGCATTTAACGCCCTTGCATATGAATCGT 2086 || || | || || || || | | || | ||| | ||| | |||||| ||| Sbjct 678835 ATTTGTAATATACTGTTGCATCTCTAAACTCAGAATTAATCGCTTTGGCATATACATCTG 678776 Query 2087 TAGCAGATTGCTGACCTCCTCTAGCAGATCTGCCGTCGATCTGAAATTCTCCCCATTCAA 2146 | | | ||||| || ||| |||||| |||| || || || ||||| || ||||| || | Sbjct 678775 CAACTGTTTGCTTACATCCCCTAGCATATCTTCCTTCAATTTGAAAATCACCCCAATCTA 678716 Query 2147 --TTGTATCG---CCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTTGACTTAGCTCC 2201 | || || || ||||| || ||||| || || | || | ||||| Sbjct 678715 CATAGTCTCCGATCCCTCCTTTTCAATGTATGATTTAATATC--------ATTTAGCAGA 678664 Query 2202 CTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGAAACCAAGTCGAAGAATCTGTT 2261 |||| || |||||| ||| || |||| | |||||| || || | Sbjct 678663 TTGAACATTTGGATGGTTCTGTT---ACTGTGTTGT-------ATGTCGAAAAACCTTTG 678614 Query 2262 ATTCGTGCACTGGTATTTCCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCA-- 2319 ||| ||||| | |||||||| |||||||| || ||||| | ||| |||||||| Sbjct 678613 ATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGCAAATGTGGTTCCCCGGC 678554 Query 2320 ---TTTTCATGGAGTTCCGTGCATATTTTGATGAACTTC----TTGTTAACTGGAGTTGA 2372 || | | |||| |||| ||| | ||||| || |||| | | |||||| Sbjct 678553 CCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTTTAGATTTGT--AGGGTAGTTGA 678496 Query 2373 TAGGTTTTGCAATTGGGAAAGAGCTTCTTCTTTTGTTAGAGAGCATTTGGGGTATGTGAG 2432 ||||||| || ||| |||| || ||||||| ||||| ||| | | | | |||| Sbjct 678495 --GGTTTTGAGATGATGAA-GAGCATCATCTTTTGAGAGAGAACATCTTGAGAAACTGAG 678439 Query 2433 GAAATAGTTTTTGGCATTTA 2452 ||||||||||||| ||||| Sbjct 678438 GAAATAGTTTTTGCTATTTA 678419 >seq1694 Length=789422 Score = 84.2 bits (92), Expect = 4e-13 Identities = 146/210 (70%), Gaps = 8/210 (4%) Strand=Plus/Minus Query 2247 GTCGAAGAATCTGTTATTCGTGCACTGGTATTTCCCTTCGAACTGGATGAGCACGTGAAG 2306 |||||| || | | ||| ||||| | | |||||||| |||||||| || ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2307 ATGAGGTTCCCCATTTTCATGGAGTTCCGTGCATATTTTGATGAACTTC----TTGTTAA 2362 ||| |||||||| | || ||||| |||| | | ||||| || |||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2363 CTGGAGTTGATAGGTTTTGCAATTGGGAAAGAGCTTCTTCTTTTGTTAGAGAGCATTTGG 2422 | |||||| |||||| | || |||| | || ||||||| ||||| ||| | | Sbjct 588129 AT--AGTTGA--GGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTG 588074 Query 2423 GGTATGTGAGGAAATAGTTTTTGGCATTTA 2452 || | |||||||||||||||| | ||||| Sbjct 588073 GGAAAGTGAGGAAATAGTTTTAGCTATTTA 588044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8246100521676