Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015490.1 Length=2640 Score E Sequences producing significant alignments: (Bits) Value seq519 105 1e-19 seq1694 93.3 7e-16 >seq519 Length=3254320 Score = 105 bits (116), Expect = 1e-19 Identities = 245/367 (67%), Gaps = 2/367 (1%) Strand=Plus/Plus Query 2100 TTGCTGACCTCCTCTAGCAGATCTGCCGTCGATTTGAAATTGTCCCCATTCGATTGTA-T 2158 ||||| || ||| ||||||||||| || || |||||||| | | || || | ||| | Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTA-CGTAGT 1743190 Query 2159 CTCCGTCTTTGTCGATGTAGGACTTGACGTCGGAGCTAGACTTAGCTCCCTGTATGTTCG 2218 |||| || || |||||||| || || || | ||| | || |||| || | || Sbjct 1743191 CTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTT 1743250 Query 2219 GATGGAAATGTGCTGACCTGGTTGGGGAAACCAAGTCGAAGAATCTGTTATTCTTGCACT 2278 ||||||| || | ||| | ||| | | ||| || |||| | ||| |||| Sbjct 1743251 GATGGAATTGAATGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2279 GGTATTTCCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGGAGTT 2338 | |||| ||| ||| ||||| || || || | ||| |||||||| || ||| |||| Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2339 CTCTGCATATTTTGATGAACTTCTTGTTGACAGGAGTGTTTAGGTTTTGTAATTGGGAAA 2398 || |||| | | | ||||| || || ||| ||| ||| ||| | || || Sbjct 1743371 CTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2399 GTGCCTCTTCTTTGGTTAGAGAGCACTTGGGGTATGTAATGAAATAATTCTTGGCATTTA 2458 | || || ||||| || || || || | ||| | || | ||||| ||| ||| ||||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTA 1743490 Query 2459 TTCTAAA 2465 ||||||| Sbjct 1743491 TTCTAAA 1743497 Score = 87.8 bits (96), Expect = 3e-14 Identities = 110/147 (75%), Gaps = 3/147 (2%) Strand=Plus/Plus Query 1257 TTATTTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGCCACTCGTTGCT-TGA 1315 |||| ||||||||||||| |||||| | ||||| | | || ||| | ||||| ||| Sbjct 1741956 TTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCATT-GTTGCACTGA 1742014 Query 1316 GCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTTAATGTGTAGGTA 1375 || ||||| ||||||| ||| | ||||||| ||| || |||||||||||| |||| Sbjct 1742015 GCCT-AGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTTAATGTGTTGGTA 1742073 Query 1376 ATATGAACAACCGCACTGCAGATCAAT 1402 |||| ||||| || | | |||||| Sbjct 1742074 ATATATGCAACCACAGTATATATCAAT 1742100 Score = 78.8 bits (86), Expect = 2e-11 Identities = 241/368 (65%), Gaps = 5/368 (1%) Strand=Plus/Plus Query 2100 TTGCTGACCTCCTCTAGCAGATCTGCCGTCGATTTGAAATTGTCCCCATTCGATTGTATC 2159 || || || ||| ||| ||||||| || || |||||||| | |||| || | || Sbjct 1748947 TTTCTTACATCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTC 1749006 Query 2160 TCCGTCTTTGTCGATGTAGGACTTGACG--TCGGAGCTAGACTTAGCTCCCTGTATGTTC 2217 ||| || || || ||||| || || || || || | || ||||| || | || Sbjct 1749007 TCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTT 1749066 Query 2218 GGATGGAAATGTGCTGACCTGGTTGGGGAAACCAAGTCGAAGAATCTGTTATTCTTGCAC 2277 |||||||| || | || || ||| | |||||| || | | ||| |||| Sbjct 1749067 GGATGGAATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAG 1749125 Query 2278 TGGTATTTCCCTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCGTGGAGT 2337 | |||||||| ||||| || || || || | ||| ||||||| | | ||| ||| Sbjct 1749126 CAGAATTTCCCTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGT 1749183 Query 2338 TCTCTGCATATTTTGATGAACTTCTTGTTGACAGGAGTGTTTAGGTTTTGTAATTGGGAA 2397 |||||||| | ||| ||||| || || ||| ||| ||||||| | || | Sbjct 1749184 TCTCTGCACACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGA 1749243 Query 2398 AGTGCCTCTTCTTTGGTTAGAGAGCACTTGGGGTATGTAATGAAATAATTCTTGGCATTT 2457 || | || ||||| || || | || | ||| | || | |||||||| ||| |||| Sbjct 1749244 AGAACATCATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTT 1749303 Query 2458 ATTCTAAA 2465 |||||||| Sbjct 1749304 ATTCTAAA 1749311 >seq1694 Length=789422 Score = 93.3 bits (102), Expect = 7e-16 Identities = 103/135 (76%), Gaps = 2/135 (1%) Strand=Plus/Minus Query 1257 TTATTTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGCCACTCGTTGC-TTGA 1315 |||| ||||||||||| ||||||| || ||||| | | |||||| | ||||| || Sbjct 596571 TTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCA-TTGTTGCACCGA 596513 Query 1316 GCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTTAATGTGTAGGTA 1375 || |||||| ||||||| |||| ||||||| ||| ||||| ||||| ||| |||| Sbjct 596512 GCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAATATGTTGGTA 596453 Query 1376 ATATGAACAACCGCA 1390 ||||| ||||| || Sbjct 596452 ATATGTGCAACCACA 596438 Score = 78.8 bits (86), Expect = 2e-11 Identities = 145/213 (68%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 2253 GTCGAAGAATCTGTTATTCTTGCACTGGTATTTCCCTTCGAACTGGATGAGCACGTGAAG 2312 |||||| || | | ||| |||| | | |||||||| |||||||| || ||||| | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2313 ATGAGGTTCCCCATTTTCGTGGAGTTCTCTGCATATTTTGATGAACTTCTTGTTGACAGG 2372 ||| |||||||| | ||| ||||||||||| | | ||||| || || | | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2373 AGTGTTTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTGGTTAGAGAGCACTTGGGGTA 2432 | ||| ||||||| | || ||| | || ||||| | ||||| || | ||| | Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAA 588070 Query 2433 TGTAATGAAATAATTCTTGGCATTTATTCTAAA 2465 || | |||||| || | | |||||||||||| Sbjct 588069 AGTGAGGAAATAGTTTTAGCTATTTATTCTAAA 588037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8338897151528