Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015627.1 Length=2601 Score E Sequences producing significant alignments: (Bits) Value seq1129 143 4e-31 seq1694 122 1e-24 seq519 116 6e-23 >seq1129 Length=1508174 Score = 143 bits (158), Expect = 4e-31 Identities = 246/353 (70%), Gaps = 8/353 (2%) Strand=Plus/Minus Query 1478 CATTTTCCTCTTTGTCGAGGAAACATTTATAACTGCTCCCCTCTCCTGGATTGCACAGCA 1537 ||||||||||||| || |||||| |||||| | || || |||||||| |||| | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1538 CGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCC 1597 ||||||||| | | |||||||||| |||| || || || ||||| || || ||||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1598 AGTCCCTTTGGGCCCCTATGAGTTCTTTCCAGTGCTTTAGCTTTAAATAATGCGGAGCAA 1657 | | | ||| | |||| || | |||||| | ||||| | |||||| ||| |||| | Sbjct 679297 AAT-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1658 TGTCATCAATGACGTTATACTCCACATCATTCGAGAAGAC--CTTGGAATTGAAGTCGAG 1715 ||||| ||||| ||||| ||||||| ||| || || | ||||| || | Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTG--TTGAAATCTAA 679181 Query 1716 GTGA---CCACTCAAATAATTATGTGGGCCTAAAGCACGCGCCCACATGGTTTTGCCTGT 1772 |||| || | | |||||||| || | | | || ||| | | ||||||||| | Sbjct 679180 GTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT 679121 Query 1773 TCGAGAATCACCTTCAATTATGATACTAATAGGTCTCTCCGGCCGCGCAGCGG 1825 |||| |||||||| || ||||| ||||||| || |||| |||| ||| Sbjct 679120 TCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq1694 Length=789422 Score = 122 bits (134), Expect = 1e-24 Identities = 188/263 (71%), Gaps = 8/263 (3%) Strand=Plus/Minus Query 1478 CATTTTCCTCTTTGTCGAGGAAACATTTATA--ACTGCTCCCCTCTCCTGGATTGCACAG 1535 |||||||||||| || ||||| |||||| || || || || |||||||| |||| Sbjct 599835 CATTTTCCTCTTCATCCGGGAAATCTTTATAGGAC-GCACCT-TCACCTGGATTACACAA 599778 Query 1536 CACGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTG 1595 |||||||||| ||| ||| |||||||||||| | || || ||||| || | ||| Sbjct 599777 TACGATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTG 599718 Query 1596 CCAGTCCCTTTGGGCCCCTATGAGTTCTTTCCAGTGCTTTAGCTTTAAATAATGCGGAGC 1655 ||| || |||| |||| || | ||||||| | ||||| | |||||| ||| ||||| Sbjct 599717 CCAATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGC 599658 Query 1656 AATGTCATCAATGACGTTATACTCCACATCATTCGAGAAGAC--CTTGGAATTGAAGTCG 1713 ||||||||| | |||| |||||||| |||| || || | ||||| || Sbjct 599657 TGCATCATCAATGTCATTATCTGGTGCATCATTCTAGAATACTGATTTG--TTGAAATCA 599600 Query 1714 AGGTGACCACTCAAATAATTATG 1736 |||||| || | |||||||| Sbjct 599599 TAGTGACCGCTTATGTAATTATG 599577 Score = 82.4 bits (90), Expect = 1e-12 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 1478 CATTTTCCTCTTTGTCGAGGAAACATTTATAAC-TGCTCCCCTCTCCTGGATTGCACAGC 1536 ||||||||||||| || | |||| | | || ||| || || | | ||||||||| Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCT-TCACTTAGATTGCACAAT 596181 Query 1537 ACGATTGATGGTATGCCACCTTTAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGC 1596 ||||||||||| |||||||||||||||| ||| || || || ||||| || || |||| Sbjct 596180 ACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGC 596121 Query 1597 CA 1598 || Sbjct 596120 CA 596119 Score = 78.8 bits (86), Expect = 2e-11 Identities = 150/217 (69%), Gaps = 8/217 (4%) Strand=Plus/Minus Query 2217 GTCGAAGAATCTGTTATTCGTGCATGTATATTTCCCTTCGAATTGTATGAGCACATGGAG 2276 |||||| || | | ||| |||||| |||||||| ||| || | || || || | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2277 ATGAGGCTCCCCATTCTCGTGAAGCTCTCTGCACACCTTGATAAACTTC---TTGTTAAC 2333 ||| || ||||| | ||| || ||||||||||| | || || || || ||| Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAA- 588131 Query 2334 GGGTGTGTTTAGGTTTTGTAATTGGGAAAGTGCGTCTTCTTTGGTGAGAGAGCA-CTTGG 2392 | ||| ||||||| | || ||| | || ||||| | |||||| || ||||| Sbjct 588130 --GATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGG 588073 Query 2393 GATAAGTGATGAAATAGTTTTTGGCATTTATTCTAAA 2429 || |||||| ||||||||||| | |||||||||||| Sbjct 588072 GA-AAGTGAGGAAATAGTTTTAGCTATTTATTCTAAA 588037 >seq519 Length=3254320 Score = 116 bits (128), Expect = 6e-23 Identities = 187/263 (71%), Gaps = 8/263 (3%) Strand=Plus/Plus Query 1441 AATTTAGCATTTTTAATAGTCCACGCTCTT-AGTGGTGCATTTTCCTCTTTGTCGAGGAA 1499 |||| |||||||| | |||| |||| || | | |||||||||| || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAAT-TCTTGAGAGCTACATTTTCCTCATTATCTAGGAA 1742310 Query 1500 ACATTTATAAC-TGCTCCCCTCTCCTGGATTGCACAGCACGATTGATGGTATGCCACCTT 1558 | |||||| ||| ||| || | | ||| ||||| ||||||||||| |||||||||| Sbjct 1742311 ATCTTTATAGGATGCACCC-TCACTTAGATAGCACAATACGATTGATGGGATGCCACCTT 1742369 Query 1559 TAATTTGAACTGGCTTGCCGTACTTACAGTTTGATTGCCAGTCCCTTTGGGCCCCTATGA 1618 |||||| ||| | || | |||| || || |||||| || |||| |||| || | Sbjct 1742370 TAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCA 1742429 Query 1619 GTTCTTTCCAGTG----CTTTAGCTTTAAATAATGCGGAGCAATGTCATCAATGACGTTA 1674 ||||||||| || || | |||||| || ||||| | ||||||||||| ||| Sbjct 1742430 ATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTA 1742489 Query 1675 TACTCCACATCATTCGAGAAGAC 1697 || ||||||| |||| || Sbjct 1742490 TATGTTGCATCATTGCAGAATAC 1742512 Score = 98.7 bits (108), Expect = 2e-17 Identities = 246/362 (68%), Gaps = 10/362 (3%) Strand=Plus/Plus Query 2073 TCCTCTAGCACTTCTGCCGTCGATCTGGAAATCTCCCCATTGCAGTGTA-TCTCCGTCCT 2131 ||| |||||| ||| || || || || ||||| | || | | ||| ||||| |||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTAC-GTAGTCTCCCTCCT 1743199 Query 2132 TGTCGATGTAGGACTTGACGTCGGAGCTAGATTTAGCTCCCTGTATGTTCGGATGGAAAT 2191 | |||||||| || || || | ||| | ||||||| || | || ||||||| | Sbjct 1743200 TTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATT 1743259 Query 2192 GTGCTGACCTGGTTGGG-GAGACCAGGTCGAAGAATCTGTTATTCGTGCATGTATATTTC 2250 | | ||| | ||| || | | ||| || |||| | ||| ||||| |||| Sbjct 1743260 GAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTA 1743318 Query 2251 CCTTCGAATTGTATGAGCACATGGAGATGAGGCTCCCCATTCTCGTGAAGCTCTCTGCAC 2310 ||| ||| || || || ||||| | ||| || ||||| || ||| || ||| ||||| Sbjct 1743319 CCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCAC 1743378 Query 2311 ACCTTGATAAACTTCTTG--TTAACGGGTGTGTTTAGGTTTTGTAATTGGGAAAGTGCGT 2368 || | || || || | | || |||| ||| ||| ||| | || ||| || | Sbjct 1743379 ACTCTTATGAATTT-TAGATTTGTAGGGTA-GTTGAGGCTTTTGAGATGATGAAGAGCAT 1743436 Query 2369 CTTCTTTGGTGAGAGAGCA-CTTGGGATAAGTGATGAAATAGTTTTTGGCATTTATTCTA 2427 | ||||| ||||| || || ||||||| |||||| ||||| |||||| |||||||||| Sbjct 1743437 CATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTA 1743495 Query 2428 AA 2429 || Sbjct 1743496 AA 1743497 Score = 78.8 bits (86), Expect = 2e-11 Identities = 245/365 (67%), Gaps = 17/365 (5%) Strand=Plus/Plus Query 2073 TCCTCTAGCACTTCTGCCGTCGATCTGGAAATC-TCCCCAT-TGCAGTGTATCTCCGTCC 2130 ||| ||| || ||| || || || || ||||| |||| || | || || |||| ||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGT--CTCCCTCC 1749013 Query 2131 TTGTCGATGTAGGACTTGACG--TCGGAGCTAGATTTAGCTCCCTGTATGTTCGGATGGA 2188 || || ||||| || || || || || | |||||||| || | || ||||||| Sbjct 1749014 TTTTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGA 1749073 Query 2189 AATGTGCTGACCTGGTTGGGGAGACCAGGTCGAAGAATCTGTTATTCGTGCATGTATATT 2248 | || | || || ||| | |||||| || | | ||| ||||| ||| Sbjct 1749074 ATTGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATT 1749132 Query 2249 TCCCTTCGAATTGTATGAGCACATGGAGATGAGGCTCCCCATTCTCGTGAAGCTCTCTGC 2308 ||||| ||| | | || ||||| | ||| || |||| | || ||| || ||||||| Sbjct 1749133 TCCCTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGC 1749190 Query 2309 ACACCTTGATAAACTTC---TTGTTAACGGGTGTGTTTAGGTTTTGTAATTGGGAAAGTG 2365 |||| || || || || || || |||| ||| ||||||| | || ||| Sbjct 1749191 ACACTTTTATGAATTTAAGATTTGTA--GGGTA-GTTGAGGTTTTTGAGATGACGAAGAA 1749247 Query 2366 CGTCTTCTTTGGTGAGAGAGCA-CTTGGGATAAGTGATGAAATAGTTTTTGGCATTTATT 2424 | || ||||| ||||| | || ||||||| |||||| ||||| |||||| ||||||| Sbjct 1749248 CATCATCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATT 1749306 Query 2425 CTAAA 2429 ||||| Sbjct 1749307 CTAAA 1749311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8214101683796