Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_015962.1 Length=2625 Score E Sequences producing significant alignments: (Bits) Value seq1129 174 3e-40 seq1694 167 4e-38 seq519 165 1e-37 >seq1129 Length=1508174 Score = 174 bits (192), Expect = 3e-40 Identities = 178/231 (77%), Gaps = 1/231 (0%) Strand=Plus/Minus Query 1490 GCATTCTTGAGTGTCCAGTTCCTGAGGGATGCGTTTTCCTCTTTGTTCAGGAAATCTTTA 1549 ||||| | ||| ||| | ||| |||||| | ||||||||||| | |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1550 TAGCTGGCACCCTCACCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1609 |||| ||||| ||||||||||| || | | ||||||||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1610 ACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGGAGCTCTTTC 1669 || || ||||| ||||||||||| ||||| ||||||| | |||||| | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTT-GCCCCCAATCAAATCTTTC 679270 Query 1670 CAGTGCTTCAACTTTAAGTATTGCGGAGAGACGTCATCAATGACGTTATAT 1720 | ||||||| ||||||||| |||| || ||||| ||||| |||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATAT 679219 >seq1694 Length=789422 Score = 167 bits (184), Expect = 4e-38 Identities = 211/290 (73%), Gaps = 0/290 (0%) Strand=Plus/Minus Query 1490 GCATTCTTGAGTGTCCAGTTCCTGAGGGATGCGTTTTCCTCTTTGTTCAGGAAATCTTTA 1549 ||||| | ||| ||||| ||| |||||| | |||||||||| | | ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1550 TAGCTGGCACCCTCACCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1609 ||| ||||| ||||||||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1610 ACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGGAGCTCTTTC 1669 || | ||||| |||||||||| ||||| |||||||| |||||| | |||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1670 CAGTGCTTCAACTTTAAGTATTGCGGAGAGACGTCATCAATGACGTTATATTCCACTTCG 1729 | ||||||| ||||||||| |||| | ||||||||| | |||| | | || Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGTGCATCA 599627 Query 1730 TTCGAGTAAACCTTTGAGTTGAAGTCCAGGTGTCCACTCAGATAATTATG 1779 ||| || | || | |||||| || ||| || || | |||||||| Sbjct 599626 TTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 118 bits (130), Expect = 2e-23 Identities = 112/143 (78%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 1490 GCATTCTTGAGTGTCCAGTTCCTGAGGGATGCGTTTTCCTCTTTGTTCAGGAAATCTTTA 1549 |||| | ||||| ||| ||| | |||| | ||||||||||| | || ||||||| | Sbjct 596270 GCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTG 596211 Query 1550 TAGCTGGCACCCTCACCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1609 ||| ||||| |||| | ||||||| | |||||||||||||| || |||||||||| | Sbjct 596210 TAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTA 596151 Query 1610 ACTGGCTTCCCGTACTTGCAATT 1632 || || ||||| ||||||||||| Sbjct 596150 ACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 165 bits (182), Expect = 1e-37 Identities = 179/237 (76%), Gaps = 4/237 (2%) Strand=Plus/Plus Query 1488 CAGCATTCTTGAGTGTCCAGTTCCTGAGGGATGCGTTTTCCTCTTTGTTCAGGAAATCTT 1547 ||||||| | || |||| ||| |||| | | | |||||||| || | |||||||||| Sbjct 1742256 CAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTT 1742315 Query 1548 TATAGCTGGCACCCTCACCTGGATTGCAGAGCACGATTGATGGGATCCCTCCTTTAATTT 1607 ||||| |||||||||| | ||| ||| | |||||||||||||| || |||||||||| Sbjct 1742316 TATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTT 1742375 Query 1608 GAACTGGCTTCCCGTACTTGCAATTTGACTGCCAGTCTTTTTGGGCCCCAAGGAGCTCTT 1667 ||| | |||| |||||||||| ||||| |||||||| |||||| | |||| Sbjct 1742376 AAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTT 1742435 Query 1668 TCCAGTG----CTTCAACTTTAAGTATTGCGGAGAGACGTCATCAATGACGTTATAT 1720 |||| || || || |||||||||| |||| || ||||||||||| |||||| Sbjct 1742436 TCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATAT 1742492 Score = 120 bits (132), Expect = 5e-24 Identities = 274/405 (68%), Gaps = 6/405 (1%) Strand=Plus/Plus Query 2071 AGCATTCAACGCCTTTGCGTATGTATCGTTGACTGTTTGCTGACCTCCTCTTGCAGATCT 2130 || ||| | ||| || | |||| ||| ||| |||||| || ||| || |||||||| Sbjct 1743096 AGAATTAATCGCTTTAGTGTATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCT 1743155 Query 2131 GCCGTCGATCTGGAATTCTCCCCATTCAATGGTGTCTCCATCCTTGTCGATGTAGGACTT 2190 || || || || || || | || || | | |||||| ||||| |||||||| || || Sbjct 1743156 TCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTT 1743215 Query 2191 AACGTCCGAGCTTGATTTAKCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGG 2250 ||| | ||| |||||||| |||| ||| ||||||| || | ||| | || Sbjct 1743216 AACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGG 1743275 Query 2251 G-GAGACCAGATCGAAGAATCTGTTATTCGTGCACTGGTACTTCCCCTCGAACTGGATGA 2309 | || | | || || |||| | ||| ||||| | | || || ||| ||||| | Sbjct 1743276 GTGATATATG-TCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAA 1743334 Query 2310 GTATGTGGAGATGAGGCTCCCCATTCTCGTGAAGCTCTCTGCAGATTTTGATGAACTTCT 2369 ||| || | ||| || ||||| || ||| || ||| |||| | | | ||||| || | Sbjct 1743335 GTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTT-T 1743393 Query 2370 TGTTTACTGGGGTTTTT-AGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAG 2428 | || | |||| || ||| ||| | || ||| || || ||||| || || || Sbjct 1743394 AGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAA 1743453 Query 2429 CA-CTGGGGATAAGTGAGGAAATAGTTTTTGGAGTTAATTCTAAA 2472 || || |||| |||||||||||| |||||| || |||||||| Sbjct 1743454 CATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Lambda K H 0.634 0.408 0.914 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8290898894708