Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016082.1 Length=2621 Score E Sequences producing significant alignments: (Bits) Value seq519 138 2e-29 seq1694 134 2e-28 seq1129 134 2e-28 >seq519 Length=3254320 Score = 138 bits (152), Expect = 2e-29 Identities = 161/216 (75%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 1498 TTCTT-AGTCCTGCATTTTCCTCTTTGTCCAGGAACTCTTTATAGCTGGAACCCTCACCA 1556 ||||| || || |||||||||| || || ||||| ||||||||| | |||||||| Sbjct 1742276 TTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTT 1742335 Query 1557 GGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTATTTG 1616 ||| ||| | ||||||| |||||| ||||||||||||| ||| | || | | ||| Sbjct 1742336 AGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTG 1742395 Query 1617 CAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTG----CTTTAGCTT 1672 ||||| |||||||||||||| |||| | |||||||||||| || || | ||| Sbjct 1742396 CAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTT 1742455 Query 1673 TAGATATTGCGGTGCGACGTCATCAATGACGTTATA 1708 || ||| || || || ||||||||||| ||||| Sbjct 1742456 TAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 >seq1694 Length=789422 Score = 134 bits (148), Expect = 2e-28 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 1479 GCATTCTTGATAGTCCAGTTTCTTAGTCCTGCATTTTCCTCTTTGTCCAGGAACTCTTTA 1538 ||||| | || ||||| || | || | |||||||||||| ||| |||| |||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1539 TAGCTGGAACCCTCACCAGGATTGCAAAGCACGATTGCTGGGATTCCACCTTTAATTTGA 1598 ||| | ||| ||||| ||||| || | ||||||| || ||| ||| |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1599 ACAGGCTTACCGTATTTGCAATTTGACTGCCAATCTTTTTGGGCCCCCAGCAATTCTTTC 1658 ||| | || || || ||||||| |||||||||||||| |||| | ||||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1659 CAGTGCTTTAGCTTTAGATATTGCGGTGCGACGTCATCAATGACGTTAT 1707 | ||||| | ||||| || || || | ||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTAT 599638 Score = 95.1 bits (104), Expect = 2e-16 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1510 CATTTTCCTCTTTGTCCAGGAACTCTTTATAGCTGGAACCCTCACCAGGATTGCAAAGCA 1569 ||||||||||||| |||| ||| ||| | ||| | ||| |||| ||||||| | | Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATA 596180 Query 1570 CGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTATTTGCAATT 1621 |||||| |||||| ||||||||||||| ||| || || || || |||||||| Sbjct 596179 CGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq1129 Length=1508174 Score = 134 bits (148), Expect = 2e-28 Identities = 150/199 (75%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 1510 CATTTTCCTCTTTGTCCAGGAACTCTTTATAGCTGGAACCCTCACCAGGATTGCAAAGCA 1569 ||||||||||||| || ||||| |||||||||| | ||| ||||| ||||| || | | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1570 CGATTGCTGGGATTCCACCTTTAATTTGAACAGGCTTACCGTATTTGCAATTTGACTGCC 1629 ||||| ||||| |||||||||| |||| || || || || |||||||| |||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1630 AATCTTTTTGGGCCCCCAGCAATTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGTGCGA 1689 ||||||||| | |||| | ||| |||||| | ||||| | ||||| || || | | Sbjct 679297 AATCTTTTT-GCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1690 CGTCATCAATGACGTTATA 1708 | ||||| ||||| ||||| Sbjct 679238 CATCATCTATGACATTATA 679220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8278099359556