Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016573.1 Length=2678 Score E Sequences producing significant alignments: (Bits) Value seq1129 132 8e-28 seq519 107 3e-20 >seq1129 Length=1508174 Score = 132 bits (146), Expect = 8e-28 Identities = 241/351 (69%), Gaps = 4/351 (1%) Strand=Plus/Minus Query 1565 CATTTTCCTCCTTGTCGAGATACTCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCA 1624 |||||||||| || || || | |||||||| | || || || || ||||| || | | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1625 CGATTGATGGGATACCCCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAATTTGACTGCC 1684 ||||||||||| |||||||| || || || ||||||||||| |||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1685 ACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTAATGGGGTGTGA 1744 | |||||||| | |||||||| || ||| | ||||| | ||||| |||| ||| || | Sbjct 679297 AATCTTTTTG-CCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1745 CATCATCGATGACGTTATACTCAGCTTCGTCTGAGTAGACCCGGGAATTGAAATCTA--- 1801 ||||||| ||||| ||||| || || | | | || |||||||||| Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGT 679179 Query 1802 GATGGCCGCTTAAGTAATTATGTGGGCCTAATGCACGAGCCCACATCGTCTTGCCCGTTC 1861 |||||||| | | ||||||||| || | | || || ||| | | || ||||| ||| Sbjct 679178 GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC 679119 Query 1862 GAGAGTCACCCTCAACAATTAAACTTATGGGCCTCTCTGGCCGCGCAGCGG 1912 || || |||| |||| |||| | || || ||||||| |||| ||| Sbjct 679118 GACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 107 bits (118), Expect = 3e-20 Identities = 170/241 (71%), Gaps = 6/241 (2%) Strand=Plus/Plus Query 1528 AATTTAGCATTGTGGAGTGTCCAGGCCCTCAATGATGCATTTTCCTCCTTGTCGAGATAC 1587 |||| |||||| || || |||| | | | | | |||||||||| || || || | Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1588 TCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTA 1647 |||||||| || ||||| | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1648 ATCTTTCTTGGCTTGCCG-TACTTGCAATTTGACTGCCACTCTTTTTGAGCACCAATCAA 1706 || || | || ||| |||||||||| ||||| |||||||| | |||||||| Sbjct 1742372 AT-TTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1707 TTCCTTCCAGTG----CTTTAGCTTTAGGTAATGGGGTGTGACATCATCGATGACGTTAT 1762 ||| ||||| || || | ||||| ||| ||| | |||||||| ||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1763 A 1763 | Sbjct 1742491 A 1742491 Score = 78.8 bits (86), Expect = 2e-11 Identities = 87/112 (78%), Gaps = 3/112 (3%) Strand=Plus/Plus Query 1310 ATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATAGACGCCATTCTCTGC-CTGATG 1368 ||||||||||| |||| ||||| || ||||| ||| || ||||| | ||| |||| | Sbjct 1741958 ATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCATTGT-TGCACTGA-G 1742015 Query 1369 CGCAGTGATGTGTTCCCCGGTGCGTGAATCCATTGTTGCTGCAGTTGATGTG 1420 | ||||| |||||||||||| | ||||||| ||| || ||||| ||||| Sbjct 1742016 CCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTTAATGTG 1742067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8460492735472