Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016574.1 Length=2649 Score E Sequences producing significant alignments: (Bits) Value seq1129 147 4e-32 seq1694 136 7e-29 seq519 136 7e-29 >seq1129 Length=1508174 Score = 147 bits (162), Expect = 4e-32 Identities = 243/349 (70%), Gaps = 4/349 (1%) Strand=Plus/Minus Query 1555 TTTTCCTGCTTCTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCATAGCACG 1614 ||||||| || || |||||||||||||||| || || || || ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1615 ATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTGCCAA 1674 |||||||||| ||||||||| |||| || || || ||||||||||| |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1675 TCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGTATTGCGGGCTGACA 1734 |||||||| | |||||||| || ||| | ||||| | ||||| ||| || | ||| Sbjct 679295 TCTTTTTG-CCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1735 TCATCGATGACGTTATACTCAACTTGATTTGAGTAGACCCGGGAATTGAAATCTAA---A 1791 ||||| ||||| ||||| | | ||| | | || ||||||||||| | Sbjct 679236 TCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGA 679177 Query 1792 TGGCCACTCAAGTAATTATGTGGGCCTAATGCTCTAGCCCACATCGTCTTACCAGTTCGA 1851 ||||| | | ||||||||| || | | || | ||| | | || || || ||||| Sbjct 679176 TGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGA 679117 Query 1852 GAATCACCTTCAACTATTATACTTATGGGCCTAACAGGCCGCGCAGCGG 1900 ||||||| ||||||||| | || ||| | |||| |||| ||| Sbjct 679116 CTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq1694 Length=789422 Score = 136 bits (150), Expect = 7e-29 Identities = 152/198 (77%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 1555 TTTTCCTGCTTC-TCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCATAGCAC 1613 ||||||| |||| ||| |||||||||||||| || || || || ||||| || | || Sbjct 599833 TTTTCCT-CTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATAC 599775 Query 1614 GATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTGCCA 1673 |||||||| ||| | | ||||||||||||| | || || |||||||||| ||||| Sbjct 599774 GATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCA 599715 Query 1674 ATCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGGT-ATTGCGGGCTGA 1732 ||||||||| | ||||| ||||| ||| | ||||| | ||||| || | || | |||| Sbjct 599714 ATCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG- 599656 Query 1733 CATCATCGATGACGTTAT 1750 ||||||| ||| | |||| Sbjct 599655 CATCATCAATGTCATTAT 599638 Score = 86.0 bits (94), Expect = 1e-13 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1555 TTTTCCTGCTTCTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCATAGCACG 1614 ||||||| || |||| ||||||| | ||| || || || | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1615 ATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATT 1664 ||||||||||| || |||||||||| ||| || || || ||||||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 136 bits (150), Expect = 7e-29 Identities = 153/202 (76%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 1555 TTTTCCTGCTTCTCCAGGAAATCTTTATAGCTGGCCCCCTCTCCAGGATTGCATAGCACG 1614 ||||||| || || ||||||||||||||| || ||||| | ||| ||| | ||| Sbjct 1742291 TTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACG 1742350 Query 1615 ATTGATGGGATACCCCCTTTAATTTGAACAGGCTTGCCGTACTTGCAATTGGACTGCCAA 1674 ||||||||||| || |||||||||| ||| | || | |||||||||| |||||| Sbjct 1742351 ATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAA 1742410 Query 1675 TCTTTTTGAGCACCAATCAATTCCTTCCAGTG----CTTTAGCTTTAGGTAT-TGCGGGC 1729 |||||||| | ||||||||||| ||||| || || | ||||| |||| || | || Sbjct 1742411 TCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGC 1742470 Query 1730 TGACATCATCGATGACGTTATA 1751 | |||||||| ||||| ||||| Sbjct 1742471 T-ACATCATCAATGACATTATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8367696105620