Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016575.1 Length=2727 Score E Sequences producing significant alignments: (Bits) Value seq519 93.3 7e-16 >seq519 Length=3254320 Score = 93.3 bits (102), Expect = 7e-16 Identities = 311/476 (65%), Gaps = 6/476 (1%) Strand=Plus/Plus Query 2093 TTGTGATATTGCAGAAAGAAGTTTTTCGGGTCTTTCTCTTTTATAACCTGCAATGCGGAA 2152 || |||||||| ||| ||| | || ||||| ||||||||||| | || |||| ||| Sbjct 1743025 TTATGATATTGTAGAGTGAAACTCTTTGGGTCATTCTCTTTTATTATTTGTAATGTTGAA 1743084 Query 2153 TCTTTATCCGCTGCATTTAAT-GCTTCTGCATAAACATCTGCTAAACATTGTCCCTCA-C 2210 ||| | | || | ||||| |||| | || |||||| | || ||| | || | Sbjct 1743085 TCTCTTGAC-CTAGAATTAATCGCTTTAGTGTATACATCTAC-AACTATTTGCTTACATC 1743142 Query 2211 CTCTTGCACTTCGTGGATCGACCTGGAATTGCCCATGGTCGATGAAATCGCCTCCCTTCT 2270 | || ||| || | ||| | || || | | || | | | || || |||| | Sbjct 1743143 CCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTT 1743202 Query 2271 CGATGTATGATTTGACATCTGACGAGCTCTTAGCTCCCTGAATGTTTGGATGGTAAGGTG 2330 ||||||||||||| |||| || | |||| |||| ||| ||||| | | Sbjct 1743203 CGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAA 1743262 Query 2331 TTGGCCTGGTTGGGGATTCCAGGTCGAAGAATCTCTGATTTGTGCACTGGTATTTCCCTT 2390 | | ||| | ||| | | ||| || |||| ||||| ||||| | |||| ||| Sbjct 1743263 TGGTTCTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTG 1743322 Query 2391 CGAACTGTATGAGCACATGGAGATGAGGCTCCCCATCTTGGTGTAACTCTCTGCACACTC 2450 ||| || || || ||||| | ||| || ||||| | ||||| ||| ||||||||| Sbjct 1743323 TGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTC 1743382 Query 2451 GAATGAATTTAATATTTGTTGGTGTACGA-AGGGAAATAAGTTTCTGCAGAGCTTCCTCT 2509 |||||||| | |||||| || ||| ||| | || | || ||||| || ||| Sbjct 1743383 TTATGAATTTTAGATTTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCT 1743441 Query 2510 TTAGATATAGAACACTGAGGGTAAGTGAGGAAATAATTCTTGGCGTTTATCTTAAA 2565 || | | ||||| ||| |||||||||||| ||| ||| ||||| |||| Sbjct 1743442 TTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8617287041084