Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016578.1 Length=2725 Score E Sequences producing significant alignments: (Bits) Value seq1129 147 4e-32 seq519 134 2e-28 seq1694 129 1e-26 >seq1129 Length=1508174 Score = 147 bits (162), Expect = 4e-32 Identities = 155/200 (78%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 1610 TTTTCCTCTTTCTCGAGGAAGTCTTTATAGCTGGACCCTTCCCCTGGATTGCAAAGCACG 1669 ||||||||||| || ||||| |||||||||| | ||||| |||||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1670 ATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTATTTGCAGTTACTTTGCCAG 1729 |||||||||| ||||||||| ||||||||||||| || ||||| ||||||||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1730 TCTCGTTGGGCCCCAACGAGTTCTTTCCAGTGCTTTAGCTTTAGGT-AGTGCGGGGCAAC 1788 ||| || | |||||| | |||||| | ||||| | ||||| || |||| || | || Sbjct 679295 TCT-TTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTAC 679238 Query 1789 GTCATCGATGACGTTGTATG 1808 ||||| ||||| || |||| Sbjct 679237 ATCATCTATGACATTATATG 679218 >seq519 Length=3254320 Score = 134 bits (148), Expect = 2e-28 Identities = 176/238 (74%), Gaps = 8/238 (3%) Strand=Plus/Plus Query 1577 GCATTGTGAAGGGTCCACGACCGGAGTGCTGAGTTTTCCTCTTTCTCGAGGAAGTCTTTA 1636 ||||| || || |||| | ||| ||| |||||||| || || ||||| |||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1637 TAGC-TGGACCCTTCCCCTGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTG 1695 ||| || ||||| | | | ||| ||| | |||||||||||||| || |||||||||| Sbjct 1742318 TAGGATGCACCCT-CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTA 1742376 Query 1696 AACGGGTTTCCCGTATTTGCAGTTACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTT 1755 |||| |||||| | ||||| ||||||||||| ||| ||| |||||| | |||||| Sbjct 1742377 AACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTT 1742436 Query 1756 CCAGTG----CTTTAGCTTTAGGTA-GTGCGGGGCAACGTCATCGATGACGTTGTATG 1808 ||| || || | ||||| ||| ||| || || || ||||| ||||| || |||| Sbjct 1742437 CCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATATG 1742493 >seq1694 Length=789422 Score = 129 bits (142), Expect = 1e-26 Identities = 164/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 1577 GCATTGTGAAGGGTCCACGACCGGAGTGCTGAGTTTTCCTCTTTCTCGAGGAAGTCTTTA 1636 ||||| || || ||||| | ||| || |||||||||| || |||| |||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1637 TAGCTGGACCCTTCCCCTGGATTGCAAAGCACGATTGATGGGATACCGCCTTTAATTTGA 1696 ||| | ||||| |||||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1697 ACGGGTTTCCCGTATTTGCAGTTACTTTGCCAGTCTCGTTGGGCCCCAACGAGTTCTTTC 1756 || ||||||| || ||||| | ||||||||| ||| ||| |||||| | ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1757 CAGTGCTTTAGCTTTAGGT-AGTGCGGGGCAACGTCATCGATG 1798 | ||||| | ||||| || |||| || || | ||||| ||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATG 599645 Score = 111 bits (122), Expect = 3e-21 Identities = 96/119 (81%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1610 TTTTCCTCTTTCTCGAGGAAGTCTTTATAGCTGGACCCTTCCCCTGGATTGCAAAGCACG 1669 ||||||||||| || | ||| ||| | ||| | ||||| | | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1670 ATTGATGGGATACCGCCTTTAATTTGAACGGGTTTCCCGTATTTGCAGTTACTTTGCCA 1728 ||||||||||| || |||||||||| |||||||||||| || ||||| ||||||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8610887273508