Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016580.1 Length=2540 Score E Sequences producing significant alignments: (Bits) Value seq1129 192 9e-46 seq519 147 4e-32 seq1694 138 2e-29 >seq1129 Length=1508174 Score = 192 bits (212), Expect = 9e-46 Identities = 283/394 (72%), Gaps = 10/394 (3%) Strand=Plus/Minus Query 1409 AATTTAGCATTATGAAGAGTCCACGCCTTCAGAGATGCATTTTCTTGTTTGTCTAGGAAG 1468 |||| ||||| || || ||| | ||| || | ||||||| | ||| |||||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1469 TCTTTATAACTAGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTTA 1528 |||||||| | || || || |||||||| |||| | ||||||||||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1529 ATTTGAACAGGCTTTCCGTATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAAC 1588 ||| |||| || || || || || || || ||||| | | ||| | |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAA 679276 Query 1589 TCTTTCCAATGTTTCATCTTTAGATAATGCGGACTGACATCATCAATGACGTTATATTGA 1648 |||||| |||| |||||||||| ||| ||| | |||||||| ||||| |||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGTT 679216 Query 1649 ACAGTATT-TGAATATACT--TTAGAATTAAAATCAA---GATGTCCGCTCAAATAATTA 1702 || ||| || | ||||| || | || ||||| | |||| ||| | | |||||| Sbjct 679215 GCATCATTGTGGA-ATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTA 679159 Query 1703 TGTGGGCCTAGTGCACGAGCCCACATCGTCTTCCCTGTTCGACTATCTCCTTCAATGATA 1762 || || | |||| || ||| | | || || ||| ||||||| ||||||||||| Sbjct 679158 TGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATT 679099 Query 1763 ATACTAATAGGTCTTTCTGGCCGCGCAGCGGAAT 1796 ||||| ||||||| ||||||| |||| ||| || Sbjct 679098 ATACTTTTAGGTCTATCTGGCCACGCATCGGTAT 679065 >seq519 Length=3254320 Score = 147 bits (162), Expect = 4e-32 Identities = 276/396 (70%), Gaps = 21/396 (5%) Strand=Plus/Plus Query 1409 AATTTAGCATTATGAAGAGTCCACGCCTTCAGAGATGCATTTTCTTGTTTGTCTAGGAAG 1468 |||| |||||| || || |||| ||| |||| | ||||||| | || |||||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1469 TCTTTATAACTAGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTTA 1528 |||||||| || ||||| | | ||| ||||| |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1529 ATTTGAACAGGCTTTCCG-TATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAA 1587 |||| ||| | |||||| | || || || ||||| || |||| |||||||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1588 CTCTTTCCAATG----TTTCATCTTTAGATAATGCGGACTGACATCATCAATGACGTTAT 1643 ||||||||||| | |||||||| || ||| |||||||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1644 ATTGAACAGTATTTGAATATACT--TTAGAATTAAAATC-AAGATGTCCGCTCAAATAAT 1700 || || ||| | ||||| || | || ||||| ||| | |||| ||| Sbjct 1742491 ATGTTGCATCATTGCAGAATACTGATTTG--TTGAAATCTAAGTGGGCCGC------AAT 1742542 Query 1701 TATGTGGGCCTAGTGCACGAGCCCACATCGTCTTCCCTGTTCGACTATCTCCTTCAATGA 1760 || |||| |||| | ||||| | | || ||| ||||||| |||||||||| Sbjct 1742543 TA--GCGGCCGAGTG-AGTGGCCCA-AGAATTTTGCCTATTCGACTCGAGCCTTCAATGA 1742598 Query 1761 TAATACTAATAGGTCTTTCTGGCCGCGCAGCGGAAT 1796 | ||| | ||||||| || ||||| | || || || Sbjct 1742599 TTATAGTTTTAGGTCTATCGGGCCGGGTAGTGGCAT 1742634 Score = 77.0 bits (84), Expect = 5e-11 Identities = 197/283 (70%), Gaps = 14/283 (5%) Strand=Plus/Plus Query 1063 ATGTCGTCCAGA-CTTGGAAATTGAGAAATGCCTTGTGGAGACCCAGTGCTCTCCGCAGG 1121 |||||||||||| |||| ||| | | ||||||| || | || | | ||| || Sbjct 1741827 ATGTCGTCCAGATCTTGAAAAAT-ATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAGA 1741885 Query 1122 CTGTGGTTGAACCGTATCTGGACGTGGT--ATATCCTGGTTGTTGTGTATGACGGGTCCT 1179 ||| |||||| ||||||||| | || || |||||||||| || | |||| Sbjct 1741886 TTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGT-TAAATTGTCTCCT 1741944 Query 1180 CCACGT-CGA-TTATCTTGAAATACAGGGGATTT-GTAATCTCCCAAATAAAGACGCCAT 1236 | | || ||||||||||||| |||| |||| ||||| |||||| | | || |||| Sbjct 1741945 CTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAAT-TCCCAAGGATATACACCAT 1742003 Query 1237 TCGCTGC-TTGAGGCGCAGTGATGAATTCCCCGGTGCGTAAATCCATGGTTGCAGCAACC 1295 | | ||| ||| || ||||| |||||||||| | |||||||| ||| | || Sbjct 1742004 T-GTTGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTT 1742061 Query 1296 GATGTGTACGTAA-ATAGTGCAGCCACAGTTTAGGTCTATGCG 1337 |||||| |||| ||| |||| ||||||| || || ||||| Sbjct 1742062 AATGTGTTGGTAATATA-TGCAACCACAGTATATATCAATGCG 1742103 Score = 77.0 bits (84), Expect = 5e-11 Identities = 154/221 (70%), Gaps = 7/221 (3%) Strand=Plus/Plus Query 1572 TTTGGGCCCCAATCAACTCTTTCCAATGTTTCATCTTTAGATAA-TGCGGACTGACATCA 1630 |||| || | ||| || |||||| |||| ||||| |||| ||| || || | |||||| Sbjct 1748485 TTTGTGCACTAATTAATTCTTTCAAATGCTTCATTTTTAAGTAAGTGGGGGCA-ACATCA 1748543 Query 1631 TCAATGACGTTATATTGAACAGTATT-TGAATATACTTTAGAATTAAAATCAAGATGTCC 1689 |||||||| |||||| || ||| || | ||||| || ||||| | || | Sbjct 1748544 TCAATGACATTATATGTTGCATCATTGTGGA-ATACTGATTTTTTGAAATCTAATTGATC 1748602 Query 1690 GCTCAAATAATTATGTGGGCCTAGTGCACGAGCCCA-CATCGTCTTCCCTGTTCGACTAT 1748 || | |||||||| |||| |||| | ||||| || || || ||| ||| ||| Sbjct 1748603 CCTAATGTAATTATGACGGCCGAGTGAGGGGGCCCAGCA--GTTTTTCCTATTCAACTTG 1748660 Query 1749 CTCCTTCAATGATAATACTAATAGGTCTTTCTGGCCGCGCA 1789 ||||||||||| ||||| ||||||| | | | ||||| Sbjct 1748661 GACCTTCAATGATTATACTTTTAGGTCTATATAGTTGCGCA 1748701 >seq1694 Length=789422 Score = 138 bits (152), Expect = 2e-29 Identities = 261/378 (69%), Gaps = 7/378 (2%) Strand=Plus/Minus Query 1409 AATTTAGCATTATGAAGAGTCCACGCCTTCAGAGATGCATTTTCTTGTTTGTCTAGGAAG 1468 |||| ||||| || || ||||| ||| || | ||||||| | || || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1469 TCTTTATAACTAGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTTA 1528 |||||||| || || || |||||||| |||| |||||||||| ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1529 ATTTGAACAGGCTTTCCGTATTTACAGTTGGACTGCCAGTCCCTTTGGGCCCCAATCAAC 1588 ||||||||| | || || || || || | ||||| || |||| ||||||| || Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1589 TCTTTCCAATGTTTCATCTTTAGATAATGCGGA-CTGACATCATCAATGACGTTATATTG 1647 |||||| | || |||||||||| ||| ||| ||| ||||||||||| | |||| | | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-CATCATCAATGTCATTATCTGG 599634 Query 1648 AACAGTATTTGAATATACT--TTAGAATTAAAATCAAGATGTCCGCTCAAATAATTATGT 1705 || ||| | ||||| || | || |||||| || ||||| | |||||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTG--TTGAAATCATAGTGACCGCTTATGTAATTATGA 599576 Query 1706 GGGCCTAGTGCACGAGCCCACATCGTCTTCCCTGTTCGACTATCTCCTTCAATGATAATA 1765 || || | | || || | | || ||| ||||||| ||||||||||| ||| Sbjct 599575 TTACCGAG-GAGTGGGCACAAACAATTTTGCCTATTCGACTTGGGCCTTCAATGATTATA 599517 Query 1766 CTAATAGGTCTTTCTGGC 1783 | ||||| | |||||| Sbjct 599516 GTTTTAGGTTTATCTGGC 599499 Score = 82.4 bits (90), Expect = 1e-12 Identities = 148/207 (71%), Gaps = 11/207 (5%) Strand=Plus/Minus Query 1123 TGTGGTTGAACCGTATCTGGACGTGGTATA---TCCTGGTTGTTGT-GTATGACGGGTCC 1178 ||| ||||||| |||| |||| | |||| || |||||||||| | ||| | |||| Sbjct 596640 TGTAGTTGAACTGTATTTGGATCTC-TATAATGTCGTGGTTGTTGTTGAATG--GTGTCC 596584 Query 1179 TCCAC-GTCGA-TTATCTTGAAATACAGGGGATTTGTAATCTCCCAAATAAAGACGCCAT 1236 || | |||| ||||||||||||| || |||||| | |||||| | | ||||||| Sbjct 596583 TCTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCAT 596524 Query 1237 TCGCTGC-TTGAGGCGCAGTGATGAATTCCCCGGTGCGTAAATCCATGGTTGCAGCAACC 1295 | | ||| ||| | |||||| |||||| |||| |||||||| ||| | |||| Sbjct 596523 T-GTTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATT 596465 Query 1296 GATGTGTACGTAAATAGTGCAGCCACA 1322 || ||| |||| ||||| ||||| Sbjct 596464 AATATGTTGGTAATATGTGCAACCACA 596438 Score = 78.8 bits (86), Expect = 1e-11 Identities = 114/156 (73%), Gaps = 4/156 (3%) Strand=Plus/Minus Query 1572 TTTGGGCCCCAATCAACTCTTTCCAATGTTTCATCTTTAGATAA-TGCGGACTGACATCA 1630 |||| ||||||||| | ||| || ||| |||||||||| ||| || | |||| ||||| Sbjct 589397 TTTGCGCCCCAATCGATTCTATCTCATGCTTCATCTTTAAGTAAGTGGGAACTG-CATCA 589339 Query 1631 TCAATGACGTTATATTGAACAGTATT-TGAATATACTTTAGAATTAAAATCAAGATGTCC 1689 |||||||| |||||| || ||| || | |||||| || ||||| | || || Sbjct 589338 TCAATGACATTATATGTTGCATCATTGTGGA-ATACTTATTTGTTGAAATCTAAGTGACC 589280 Query 1690 GCTCAAATAATTATGTGGGCCTAGTGCACGAGCCCA 1725 ||| | |||||||| | ||||||| || ||||| Sbjct 589279 GCTAATGTAATTATGACGACCTAGTGAGCGGGCCCA 589244 Score = 78.8 bits (86), Expect = 1e-11 Identities = 108/150 (72%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1409 AATTTA-GCATTATGAAGAGTCCACGCCTTCAGAGATGCATTTTCTTGTTTGTCTAGGAA 1467 |||||| |||| || || | ||| |||||| | ||||||| | ||| || | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1468 GTCTTTATAACTAGCCCCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTT 1527 ||| | || || || || | | ||||||||| |||||||||||||| || ||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1528 AATTTGAACAGGCTTTCCGTATTTACAGTT 1557 ||||| ||| || || || || || || || Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8018908772728