Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016649.1 Length=2750 Score E Sequences producing significant alignments: (Bits) Value seq519 104 4e-19 >seq519 Length=3254320 Score = 104 bits (114), Expect = 4e-19 Identities = 239/354 (68%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 2227 TCCTCTTGCTGATCTTCCATCGATCTGAAATTCTCCCCAGTCGAGAATGTCCCCGTCCTT 2286 ||| || || ||||||||||| || ||||| || | || || | ||| || ||||| Sbjct 1743141 TCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTT 1743200 Query 2287 GGCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATG 2346 ||||||| || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743201 TTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTG 1743260 Query 2347 TGCTGACCTGGTTGGG-GATACGAGGTCGAAGAATCTGTTATTTTTGCACTTGTATTTGC 2405 | ||| | ||| |||| | ||| || |||| | ||| |||| | |||| | Sbjct 1743261 AATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTAC 1743319 Query 2406 CTTCGAACTGGATGAGCACGTGAAGATGAGGTTCCCCATTTTCATGAAACTCTCTGCAGA 2465 || ||| ||||| || || || | ||| |||||||| || || | ||| |||| | Sbjct 1743320 CTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACA 1743379 Query 2466 TTCTAATGTATTTTTTGTTTACTGGGGT--TTGTAGGTTTTGTAATTGGGAAAGTGCCTC 2523 ||| ||| | |||| | || | |||| ||| ||| ||| | || ||| || || Sbjct 1743380 CTCTTATG-AATTTTAGATTTGTAGGGTAGTTG-AGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2524 CTCTTTAGTAAGAGAGCATGTGGGATAAGTGATGAAATAATTTTTGGCATTTAT 2577 ||||| || || || ||| | || |||||| ||||| ||||||| |||||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTAT 1743491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8690884368208