Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016660.1 Length=2740 Score E Sequences producing significant alignments: (Bits) Value seq519 111 3e-21 >seq519 Length=3254320 Score = 111 bits (122), Expect = 3e-21 Identities = 248/361 (69%), Gaps = 10/361 (3%) Strand=Plus/Plus Query 2229 CCTCTTGCAGATCTTCCATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTC 2288 || || |||||||||||||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2289 TCGACGTATGACTTGACGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2348 |||| |||||| || || | ||| ||||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2349 GCTGACCTGGTTGGGGAGA-CCAAGTCGAAGAATCGGTGATTCGTGCACTGGTACTTTCC 2407 | || ||| ||| || | ||| || |||| ||||| ||||| | | || || Sbjct 1743262 ATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2408 CTCGAACTGGATGAGCATGTGTAGATGAGGTTTCCCATTTTGATGAAGCTCTCTGCAGA- 2466 ||| ||||| || | || | ||| |||| ||| || || || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2467 TCTTGATATATTTTATTGAAGT-TGGGGTA-TTTAGGTTTTTGATTTGGGAAAGTGCTTC 2524 |||| || |||||| || | | ||||| || ||| |||||| || ||| || || Sbjct 1743381 TCTT-ATGAATTTTA--GATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATC 1743437 Query 2525 CTCTTTTGTTAGAGAGCA-GTCGGGATAAGTGAGGAAGTAGTTTTTGGCGTTTAATTTAA 2583 |||||||| || || || | |||| |||||||||| | |||||| |||| | ||| Sbjct 1743438 ATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTAA 1743496 Query 2584 A 2584 | Sbjct 1743497 A 1743497 Score = 87.8 bits (96), Expect = 3e-14 Identities = 349/526 (66%), Gaps = 29/526 (6%) Strand=Plus/Plus Query 2073 ATTGGAGGTGTAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAGTACATAA 2132 ||| |||| | || || | | | ||||||| ||| ||||||||| ||||||| | || Sbjct 1748801 ATTAGAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAA 1748860 Query 2133 -TCTTTTGGTGCTAATTCTTTAATGATTC-TAATA--GCCTCTGACTTACTGCCTGCGTT 2188 ||||| ||| || ||||| || ||| |||| || ||| ||| ||| | || Sbjct 1748861 CTCTTTGGGT-CTTTCTCTTTTATTATTTGTAATGCTGCATCT--CTTGGTGCATAA-TT 1748916 Query 2189 AAGTGCTGCGGCGTAAGCGTCATTGGCTGACTGTTGTCCC----CCTCTTGCAGATCTTC 2244 || ||| | ||||| | || || ||| || || || || ||||||||| Sbjct 1748917 AATCGCTTCAGCGTATACATCT---GCA-ACTATTTTCTTACATCCCCTAACAGATCTTC 1748972 Query 2245 CATCGATCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTCTCGACGTATGACTTGA 2304 |||| || ||||| || |||| || | |||||| ||||| || | |||||| || | Sbjct 1748973 CATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAA 1749032 Query 2305 --CGTCCGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGG 2362 | || || |||||||||| |||| || |||||||| || | || || | Sbjct 1749033 CCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCT-ATTAG 1749091 Query 2363 GGAGACCAAGTCGAAGAATCGGTGATTCGTGCACTGGTACTTTCCCT-CGAACTGGATGA 2421 || | |||||| || | ||||| ||||| | | ||||||| ||||| || || Sbjct 1749092 GGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAG-AATTTCCCTGTGAACTAGA-GA 1749149 Query 2422 GCATGTGTAGATGAGGTTTCCCATTTTGATGAAGCTCTCTGCAGATCTTGATATATTTTA 2481 | || | ||| || ||||| || || || |||||||| | || || |||| | Sbjct 1749150 TTACATGCAAATGTGG-TTCCCGTTGCTGTGTAGTTCTCTGCACACTTTTATGAATTTAA 1749208 Query 2482 TTGAAGT-TGGGGTA-TTTAGGTTTTTGATTTGGGAAAGTGCTTCCTCTTTTGTTAGAGA 2539 || | | ||||| || |||||||||| || ||| | || |||||||| || | Sbjct 1749209 --GATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCATCTTTTGTGAGTAA 1749266 Query 2540 GCA-GTCGGGATAAGTGAGGAAGTAGTTTTTGGCGTTTAATTTAAA 2584 || | |||| ||||||| || || |||||| |||| | |||| Sbjct 1749267 ACATCTTGGGA-AAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8658885530328