Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016965.1 Length=2762 Score E Sequences producing significant alignments: (Bits) Value seq519 91.5 3e-15 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 3e-15 Identities = 338/517 (65%), Gaps = 12/517 (2%) Strand=Plus/Plus Query 2092 AAAATCCTATCTAAATTTGAATTTAAATTATGATACTGTAATACATAATCCTTTGGAGCT 2151 ||||| | | | ||||| ||||| ||||||||||| |||| || |||||| | Sbjct 1742998 AAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACTCTTTGGGTCA 1743057 Query 2152 TTCTCCTTTAATATATTGAGGGCCTCAGCTTTGGACCCTGAATTGATTGCCTCGGCATAT 2211 ||||| |||| ||| | | | | || | |||| ||||| || || | | ||| Sbjct 1743058 TTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGTAT 1743117 Query 2212 GCGTCGTTGGCAGATTGGCAACTCTCTCTAGCTGATCTTCCATCGACTTGGAAAACTCCA 2271 | || | ||| || | ||||| ||||||||||| | ||| ||| | | Sbjct 1743118 ACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCT 1743177 Query 2272 TGATCAAGCACGTCTCCGTCTTTCTCCATGTAGGTTTTGACATCTGAAGAGCTCTTAGCT 2331 ||| | |||||| || || || ||||| | ||| |||| || | |||| Sbjct 1743178 CAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAA 1743237 Query 2332 CCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGG-GATGTGAGGTCGAAGAATCT 2390 |||| || ||||||| || | ||| | ||| ||| | | ||| || |||| Sbjct 1743238 AATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATC- 1743295 Query 2391 ATTG-TTTCTGCACTGGAATTTACCTTCGAATTGGATGAGCACATGCAAGTGAGGAGTCC 2449 |||| || |||| |||||||||| ||| ||||| || |||||||| || || || Sbjct 1743296 ATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCC 1743355 Query 2450 CATCTTCGTGAAGCTCTCTGCAAATTCTAATAAATTTTTTGGATGT-GGGT-GTTTGGAT 2507 | | ||| || ||| |||| | ||| || |||||| ||| |||| ||| | Sbjct 1743356 CGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGC 1743415 Query 2508 ATTTAACAATTGGGAAAGTGCCTCTTCTTTAGCTAGAGAGCA-CTTGGGATAAGTGAGAA 2566 ||| | | || ||| || || ||||| | || || || ||||||| ||||||| | Sbjct 1743416 TTTTGAGA--TGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGA 1743472 Query 2567 AATAATTTTTTGCATTTATTTTAAACCGATTGGGGGC 2603 ||| |||||| ||||||| |||||| ||||| || Sbjct 1743473 AATGATTTTTGCTATTTATTCTAAACC--TTGGGAGC 1743507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8729282973664