Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016984.1 Length=2747 Score E Sequences producing significant alignments: (Bits) Value seq3069 80.6 5e-12 seq2957 78.8 2e-11 >seq3069 Length=10854949 Score = 80.6 bits (88), Expect = 5e-12 Identities = 128/181 (71%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 1297 CAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGATGTCTCGGTTCCT 1356 ||| |||||||| |||||| ||||| |||||||| | |||||||| ||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1357 CAGGAATGGCCTGTTGTGGTGCTCGGTTATCTTGAAATATAGGGGATTTGTTATCTCCCA 1416 ||||| || | ||||| |||| |||||||||||||||||||| || || || Sbjct 3754461 GTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTCA 3754520 Query 1417 GATAAACACGCCATTCTCTGC-CTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCA 1475 ||| | ||| |||| | ||| || ||| | ||||| || ||| ||||| ||| || Sbjct 3754521 AATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1476 T 1476 | Sbjct 3754580 T 3754580 >seq2957 Length=4215098 Score = 78.8 bits (86), Expect = 2e-11 Identities = 129/181 (71%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 1298 AACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGATGTCTCGGTTCCTC 1357 || |||||| | ||||||| |||||||||||||| | | ||||||| | || | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1358 AGGAATGGCCTGTTGTGGTGCTCGGTTATCTTGAAATATAGGGGATTTGTTATCTCCCAG 1417 ||||| || | ||||| |||||||||||||| || |||||| || ||| || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1418 ATAAACACGCCATTCTCTGC-CTGAGCTGCAGTGATGGGTTCC-CCTGTGCGTGAATCCA 1475 || | || |||| | ||| |||||| ||| ||| || |||| | ||||| |||||| Sbjct 1238869 GTATATACTTCATTGT-TGCACTGAGCCGCAATGA-GGTTTCCATCAGTGCGAAAATCCA 1238926 Query 1476 T 1476 | Sbjct 1238927 T 1238927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8681284716844