Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016998.1 Length=2675 Score E Sequences producing significant alignments: (Bits) Value seq1129 174 3e-40 seq519 138 2e-29 seq1694 136 7e-29 >seq1129 Length=1508174 Score = 174 bits (192), Expect = 3e-40 Identities = 277/391 (71%), Gaps = 10/391 (3%) Strand=Plus/Minus Query 1532 AATTTCGCATTATGGAGTGTCCACGCTCTT-AGAGATGCATTTTCCTCTTTGTCGAGGAA 1590 |||| ||||| ||||| ||| | |||| || | ||||||||||||| || ||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAAT-TCTTGAGGGCAACATTTTCCTCTTTATCTAGGAA 679396 Query 1591 ATATTTATAACTGGCCCCCTCTCCTGGATTACATAGCACAATTGATGGGATACCTCCTTT 1650 || |||||| | || || || ||||||||||| | | |||||||||| ||||| Sbjct 679395 ATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTT 679336 Query 1651 AATTTGAACTGGCTTCCCGTATTTGCAGTTGCTTTGCCAGTCTTTCTGGGCCCCAATGAG 1710 |||| |||| || ||||| || ||||| || |||||||| ||||| | | ||||||| | Sbjct 679335 AATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTT-TTGCCCCCAATCAA 679277 Query 1711 CTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGAGTGACATCATCAATGACGTTATATTC 1770 |||||| | ||||| | ||||| || ||||| |||||||| ||||| |||||| Sbjct 679276 ATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGT 679217 Query 1771 CGCTTCAT--TTGAATAAACCCTAGAATTGAAATCCA---GATGTCCACTCAAATAATTA 1825 || |||| | ||||| | | |||||||| | |||| || | | |||||| Sbjct 679216 TGCATCATTGTGGAATACTGATTTG--TTGAAATCTAAGTGATGGCCGTTAATGTAATTA 679159 Query 1826 TGTGGGCCCAATGCACGAGCCCACATCGTCTTCCCCGTTCGACTATCACCCTCGACGATG 1885 || || | | || || ||| | | || || || ||||||| || || | ||| Sbjct 679158 TGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCGACTTGGGCCTTCAATGATT 679099 Query 1886 ATACTAATAGGTCTCTCCGGCCGCGCAGCGG 1916 ||||| ||||||| || |||| |||| ||| Sbjct 679098 ATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 138 bits (152), Expect = 2e-29 Identities = 184/253 (73%), Gaps = 6/253 (2%) Strand=Plus/Plus Query 1532 AATTTCGCATTATGGAGTGTCCACGCTCTT-AGAGATGCATTTTCCTCTTTGTCGAGGAA 1590 |||| ||||| || || |||| |||| |||| | |||||||||| || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAAT-TCTTGAGAGCTACATTTTCCTCATTATCTAGGAA 1742310 Query 1591 ATATTTATAACTGGCCCCCTCTCCTGGATTACATAGCACAATTGATGGGATACCTCCTTT 1650 || |||||| || ||||| | | ||| || | || ||||||||||| || ||||| Sbjct 1742311 ATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1651 AATTTGAACTGGCTTCCCGTATTTGCAGTTGCTTTGCCAGTCTTTCTGGGCCCCAATGAG 1710 ||||| ||| | |||| | ||||| || |||||||| ||||| || ||||||| | Sbjct 1742371 AATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1711 CTCTTTCCAGTG----CTTTAGCTTTAGATATTGCGGAGTGACATCATCAATGACGTTAT 1766 |||||||| || || | ||||| ||| |||| |||||||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1767 ATTCCGCTTCATT 1779 || || ||||| Sbjct 1742491 ATGTTGCATCATT 1742503 Score = 80.6 bits (88), Expect = 5e-12 Identities = 185/271 (68%), Gaps = 6/271 (2%) Strand=Plus/Plus Query 2156 TGCTGACCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCATTCGAGAGTA-TC 2214 |||| || ||| ||||||||||| || || || || || ||| | || || | ||| || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTA-CGTAGTC 1743191 Query 2215 TCCGTCCTTGTCGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTTGG 2274 ||| ||||| |||||||| || || || | || | |||||||| |||| ||| | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2275 ATGGAAATGTGCTGACCTGGTTGGG-GATACCAAGTCGAACAATCTCTGATTTGTG-ATC 2332 |||||| || | ||| | ||| |||| | ||| || |||| ||||| ||| | | Sbjct 1743252 ATGGAATTGAATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2333 TGTGCTTTGCCTTCGAGTTGGATAAGCACGTGGAGATGAGGTTGCCCATCTTCGTGTAAC 2392 | ||| ||| || |||||||| || || | ||| |||| ||| | ||||| Sbjct 1743311 AG-AATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGT 1743369 Query 2393 TCTCGGCAGATTTTGATGTATTTCTTATTTG 2423 ||| ||| | | | ||| |||| ||||| Sbjct 1743370 TCTTTGCACACTCTTATGAATTTTAGATTTG 1743400 >seq1694 Length=789422 Score = 136 bits (150), Expect = 7e-29 Identities = 181/249 (73%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 1532 AATTTCGCATTATGGAGTGTCCACGCTCTT-AGAGATGCATTTTCCTCTTTGTCGAGGAA 1590 |||| ||||| ||||| ||||| |||| || | |||||||||||| || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAAT-TCTTGAGGGCCACATTTTCCTCTTCATCCGGGAA 599814 Query 1591 ATATTTATAACTGGCCCCCTCTCCTGGATTACATAGCACAATTGATGGGATACCTCCTTT 1650 || |||||| || || || ||||||||||| | || ||||||| ||| | | ||| Sbjct 599813 ATCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTT 599754 Query 1651 AATTTGAACTGGCTTCCCGTATTTGCAGTTGCTTTGCCAGTCTTTCTGGGCCCCAATGAG 1710 ||||||||| | ||||| || ||||| | |||||||| ||||| || ||||||| | Sbjct 599753 AATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAA 599694 Query 1711 CTCTTTCCAGTGCTTTAGCTTTAGATATTGCGGAGTGACATCATCAATGACGTTATATTC 1770 |||||| | ||||| | ||||| || |||| ||||||||||| | |||| | Sbjct 599693 TTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGG 599634 Query 1771 CGCTTCATT 1779 || ||||| Sbjct 599633 TGCATCATT 599625 Score = 89.7 bits (98), Expect = 9e-15 Identities = 113/153 (74%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 1538 GCATTATGGAGTGTCCACGCTCTT-AGAGATGCATTTTCCTCTTTGTCGAGGAAATATTT 1596 |||| ||||||| ||| |||| || | ||||||||||||| || | ||||| | | Sbjct 596270 GCATATTGGAGTGCCCAAT-TCTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCT 596212 Query 1597 ATAACTGGCCCCCTCTCCTGGATTACATAGCACAATTGATGGGATACCTCCTTTAATTTG 1656 || || || || | | |||| || | || ||||||||||| || |||||||||| Sbjct 596211 GTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTTAATTTT 596152 Query 1657 AACTGGCTTCCCGTATTTGCAGTTGCTTTGCCA 1689 ||| || ||||| || ||||| || |||||||| Sbjct 596151 AACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Score = 77.0 bits (84), Expect = 5e-11 Identities = 180/265 (68%), Gaps = 5/265 (2%) Strand=Plus/Minus Query 2153 GTCTGCTGACCTCCTCTAGCAGATCTGCCGTCGATCTGGAATTCACCCCATTCGAGAGTA 2212 || |||| || || ||||||||||| || ||||| || || |||||||| || | ||| Sbjct 599272 GTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTA-CGTA 599214 Query 2213 -TCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTT 2271 ||||| ||||| || ||||| || || || | || | |||||| | ||||| | Sbjct 599213 GTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACT 599154 Query 2272 TGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGTCGAACAATCTCTGATTTG-TGA 2330 ||||||||| || | ||| | ||| | | |||||| || || |||| | | | Sbjct 599153 TGGATGGAATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCA 599095 Query 2331 TCTGTGCTTTGCCTTCGAGTTGGATAAGCACGTGGAGATGAGGTTGCCCATCTTCGTGTA 2390 | | ||| ||| || || || ||| ||||| | ||| |||| ||| | || || Sbjct 599094 ACAG-AATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTA 599036 Query 2391 ACTCTCGGCAGATTTTGATGTATTT 2415 | |||| ||| | | | ||| |||| Sbjct 599035 ATTCTCAGCACACTCTTATGAATTT 599011 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8450893084108