Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_016999.1 Length=2660 Score E Sequences producing significant alignments: (Bits) Value seq1129 118 2e-23 seq519 100 5e-18 seq1694 95.1 2e-16 >seq1129 Length=1508174 Score = 118 bits (130), Expect = 2e-23 Identities = 239/351 (68%), Gaps = 8/351 (2%) Strand=Plus/Minus Query 1520 TTTTCTTCTTTGTCGAGGAACGATTTATAGCTGGCGCCCTCGCCAGGATTGCAAAGCACA 1579 ||||| ||||| || ||||| |||||||| || || || || ||||| || | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1580 ATGCATGGGATTCCACCTTTAATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAG 1639 || |||||| |||||||||| |||| || ||||| || |||||||| |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1640 TCCTTTTGAGCACCTATCAATTCTTTCCAGTGCTTTAACTTTAGATATTGCGGTGCGATG 1699 || ||||| | || ||||| |||||| | ||||| | ||||| || || | | Sbjct 679295 TCTTTTTGCCC-CCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1700 TCATCTATCACGTTGTACTGCACATCATTT--GAATAGACCTTTGAATTGAAATCGAGGT 1757 |||||||| || || || ||||||| ||||| |||| |||||||| | || Sbjct 679236 TCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTG--TTGAAATCTAAGT 679179 Query 1758 GA---CCACTCAAGTAATTATGGGACCCCAATGCACGTGCCCACATGGTCTTGCCCGTTC 1814 || || | | ||||||||| | | || || ||| | | || ||||| ||| Sbjct 679178 GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC 679119 Query 1815 GAGAGTCACCCTCGATGATTATACTAATTGGTCTCTCCGGCCGCGCAGCGG 1865 || || || ||||||||||| | ||||| || |||| |||| ||| Sbjct 679118 GACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 Score = 80.6 bits (88), Expect = 4e-12 Identities = 91/122 (75%), Gaps = 5/122 (4%) Strand=Plus/Minus Query 2071 ATTTAACGCCTTTGCATATGTATCGTTAACTGTCTGTTGACCTCCTCGAGCAGATCGTCC 2130 ||| | ||| || |||||| ||| |||||| || | || ||| | |||| ||| ||| Sbjct 678801 ATTAATCGCTTTGGCATATACATCTGCAACTGTTTGCTTACATCCCCTAGCATATCTTCC 678742 Query 2131 GTCGATCTGAAAATCACCCCATTCGACGTAATCTCCG-----TCCTTCTCAATATATGAT 2185 || || |||||||||||||| || || || |||||| ||||| ||||| |||||| Sbjct 678741 TTCAATTTGAAAATCACCCCAATCTACATAGTCTCCGATCCCTCCTTTTCAATGTATGAT 678682 Query 2186 TT 2187 || Sbjct 678681 TT 678680 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1481 AATTGCGCATTGTGTATCGTCCACTGTCTAAGTGATGCGTTTTCTTCTTTGTCGAGGAAC 1540 |||| ||||| |||| | |||| | | || | | | ||||| || || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1541 GATTTATAGCTGGCGCCCTCGCCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTA 1600 ||||||| || ||||| | ||| ||| | || || ||||||| ||||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1601 ATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAAT 1660 |||| ||| | |||| | |||||||| |||||| || ||||| | || |||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1661 TCTTTCCAGTGCT 1673 |||||||| |||| Sbjct 1742432 TCTTTCCAATGCT 1742444 >seq1694 Length=789422 Score = 95.1 bits (104), Expect = 2e-16 Identities = 201/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Minus Query 1481 AATTGCGCATTGTGTATCGTCCACTGTCTAAGTGATGCGTTTTCTTCTTTGTCGAGGAAC 1540 |||| ||||| || | |||||| | | || | | ||||| |||| || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1541 GATTTATAGCTGGCGCCCTCGCCAGGATTGCAAAGCACAATGCATGGGATTCCACCTTTA 1600 ||||||| || || || || ||||| || | || || ||| ||| ||| |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1601 ATTTGAACTGGCTTCCCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCACCTATCAAT 1660 |||||||| | ||||| || ||||||| |||||| || ||||| | || || ||| Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1661 TCTTTCCAGTGCTTTAACTTTAGATATTGCGGTGCGATGTCATCTATCACGTTGTACTGC 1720 |||||| | ||||| | ||||| || || || ||||| || | || | | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGGT 599633 Query 1721 ACATCAT--TTGAATAGACCTTTGAATTGAAATCGAGGTGACCACTCAAGTAATTATG 1776 |||||| | ||||| |||| |||||||| |||||| || | ||||||||| Sbjct 599632 GCATCATTCTAGAATACTGATTTG--TTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 91.5 bits (100), Expect = 2e-15 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 2098 AACTGTCTGTTGACCTCCTCGAGCAGATCGTCCGTCGATCTGAAAATCACCCCATTCGAC 2157 |||||| || | || || | |||||||| ||| ||||| |||||||||||||| || || Sbjct 599276 AACTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTAC 599217 Query 2158 GTAATCTCCGTCCTTCTCAATATATGATTTGGCGTCGGAGGATGACTT 2205 ||| ||||| ||||| ||||| |||||||| | | |||| ||| || Sbjct 599216 GTAGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTT 599169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8402894827288