Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_017000.1 Length=2656 Score E Sequences producing significant alignments: (Bits) Value seq519 147 4e-32 seq1129 136 7e-29 seq1694 132 8e-28 >seq519 Length=3254320 Score = 147 bits (162), Expect = 4e-32 Identities = 340/505 (67%), Gaps = 8/505 (2%) Strand=Plus/Plus Query 2003 GAAAATCCTATCTAGATTGCTAGAGAGGTTGTGATATTGGA-AGAGAAACTTCTCCGGCA 2061 |||||| | | | | |||| | || || |||||||| | || |||||| || || Sbjct 1742997 GAAAATTCGACCCAAATTGGAATTGAAATTATGATATTGTAGAGTGAAACT-CTTTGGGT 1743055 Query 2062 GTTTCTCTTTTATTATTTGCATGGCTTCTTCCTTTGAAGAAGCATTTAACGCCTCGGAGG 2121 ||||||||||||||||| | | | || |||| || ||| | ||| | | | Sbjct 1743056 CATTCTCTTTTATTATTTGTAATGTTGAATCTCTTGACCTAGAATTAATCGCTTTAGTGT 1743115 Query 2122 CTGCATCATTAACTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAATGAC 2181 | |||| |||| | |||| || ||| |||||||||||||| || | |||||||| | Sbjct 1743116 ATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCAT 1743175 Query 2182 CCCATTCGACGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGGATGATTTTG 2241 | || || ||||| || || ||||| |||||||| || || |||| ||||| |||||| | Sbjct 1743176 CTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAG 1743235 Query 2242 CACTCTGTATATTGGCATGGGA--GACGGAAGAGGTGTTTGGATGTTTGAGGTCGAAGAA 2299 | || | ||| |||| | || | | |||| || || | | ||| || || Sbjct 1743236 AAAATTGAACATTTTGATGGAATTGAATG--GTTCTGTTAGGGTGATATATGTCAAAAAA 1743293 Query 2300 TCTGCAATTCGTGCACTGGAACTTTCCTTCGAATTGAATGAGAGCATGCAGATGCGGTTC 2359 || ||| ||||| ||| || ||| ||| || || || |||||| ||| ||||| Sbjct 1743294 TCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTC 1743353 Query 2360 CCCATTCTCGTGAAGTTCTCTGCAGATTCTGATATATTTCTTGTTGACTGGTGT-GTCTA 2418 ||| || ||| |||||| |||| | ||| || |||| | | | | | || || | Sbjct 1743354 CCCGTTGCTGTGTAGTTCTTTGCACACTCTTATGAATTT-TAGATTTGTAGGGTAGTTGA 1743412 Query 2419 GGTTTTGAAGCTGTTCAATTGCACTCTCTTTCGCAATTGAGCATCGGGGATATGTGAGGA 2478 || ||| || || | || ||| ||||| | | || |||| || | ||||||| Sbjct 1743413 GGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACATCTTGGGAAAGTGAGGA 1743472 Query 2479 AATAATTTTTGGCGTTTATTTTAAA 2503 ||| ||||||| |||||| |||| Sbjct 1743473 AATGATTTTTGCTATTTATTCTAAA 1743497 Score = 122 bits (134), Expect = 1e-24 Identities = 145/194 (75%), Gaps = 2/194 (1%) Strand=Plus/Plus Query 1515 AATTTTGCATTGTGTATCGTCCAGTTTCGTAATGCTGTGTTTTCCTCTTTGTCGAGGAAA 1574 |||| ||||| |||| | |||| || | ||| |||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1575 TCTTTATA-ACTGGACCCTTCGCCAGGATTGCAAAGCACGATTGATGGGATACCACCTTT 1633 |||||||| || |||| || | ||| ||| | |||||||||||||| |||||||| Sbjct 1742312 TCTTTATAGGATGCACCC-TCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1634 AATTTGAACAGGCTTGCCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAATCAA 1693 ||||| ||| | || | | |||||||| |||||| || ||||| |||||||||| Sbjct 1742371 AATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1694 TTCTTTCCAGTGCT 1707 ||||||||| |||| Sbjct 1742431 TTCTTTCCAATGCT 1742444 Score = 116 bits (128), Expect = 6e-23 Identities = 321/481 (67%), Gaps = 17/481 (4%) Strand=Plus/Plus Query 2031 TTGTGATATTGGAAGA-GAAACTTCTCCGGCAGTTTCTCTTTTATTATTTGCATGGCTTC 2089 || |||||||| | | |||||| || || |||||||||||||||||| | ||| | Sbjct 1748840 TTATGATATTGTAGAATGAAACT-CTTTGGGTCTTTCTCTTTTATTATTTGTAATGCTGC 1748898 Query 2090 TTCCTTTGAAGAAGCATTTAACGCCTCGGAGGCTGCATCATTAACTGTCTGCTGACCTCC 2149 || ||| | | ||| | ||| || | | | |||| |||| | | || || ||| Sbjct 1748899 ATCTCTTGGTGCATAATTAATCGCTTCAGCGTATACATCTGCAACTATTTTCTTACATCC 1748958 Query 2150 TCTAGCAGATCTTCCGTCGACTTGAAAATGACCCCATTCGACGTAATCACCGTCCTTCTC 2209 ||| |||||||||| || | |||||||| | |||| || || || || || ||||| || Sbjct 1748959 CCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTTTTC 1749018 Query 2210 GATGTAGGACTTGA--CATCAGAGGATGATTTTGCACTCTGTATATTGGCATGGGAGACG 2267 ||||| || || | ||||| ||| |||||| ||| || | ||| | |||| | Sbjct 1749019 AATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGG--AATT 1749076 Query 2268 GAAGAGGTGTTTGGATGTTTG-AGGTCGAAGAATCTGCAATTCGTGCACTGGAACTTTCC 2326 ||| | | | | ||||| | |||||| || | ||| ||||| ||| || || Sbjct 1749077 GAATGGTTCTATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTCCC 1749136 Query 2327 TTCGAATTGAATGAGAGCATGCAGATGCGGTTCCCCATTCTCGTGAAGTTCTCTGCAGAT 2386 | ||| | | || |||||| ||| ||||||| | || ||| ||||||||||| | Sbjct 1749137 TGTGAACT-AGAGATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCACAC 1749194 Query 2387 TCTGATATATTT----CTTGTTGACTGGTGTGTCTAGGTTTTGAAGCTGTTCAATTGCAC 2442 | | || |||| |||| | ||| || ||||||| || || || || Sbjct 1749195 TTTTATGAATTTAAGATTTGTAG---GGT-AGTTGAGGTTTTTGAGATGACGAAGAACAT 1749250 Query 2443 TCTCTTTCGCAATTGAGCATCGGGGATATGTGAGGAAATAATTTTTGGCGTTTATTTTAA 2502 ||||| | | | | |||| || | ||||| |||||||||||| |||||| ||| Sbjct 1749251 CATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAA 1749310 Query 2503 A 2503 | Sbjct 1749311 A 1749311 >seq1129 Length=1508174 Score = 136 bits (150), Expect = 7e-29 Identities = 145/190 (76%), Gaps = 1/190 (1%) Strand=Plus/Minus Query 1554 TTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGACCCTTCGCCAGGATTGCAAAGCACG 1613 ||||||||||| || |||||||||||||| | | ||||| || ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1614 ATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTATTTGCAATTTGATTGCCAG 1673 |||||||||| |||||||||| |||| || || || || |||||||| |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1674 TCCTTTTGAGCCCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGATAGGTGGGCGCGATG 1733 || ||||| |||||||||| |||||| | ||||| | ||||| || ||||| | | Sbjct 679295 TCTTTTTG-CCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1734 TCGTCTATGA 1743 || ||||||| Sbjct 679236 TCATCTATGA 679227 Score = 102 bits (112), Expect = 1e-18 Identities = 241/359 (67%), Gaps = 4/359 (1%) Strand=Plus/Minus Query 2027 GAGGTTGTGATATTGGAAGA-GAAACTTCTCCGGCAGTTTCTCTTTTATTATTTGCATGG 2085 ||| || ||| |||| | | |||||| || ||| |||| |||||||||||| | | Sbjct 695374 GAGATTATGAGATTGTAGAATGAAACT-CTTCGGGTCATTCTATTTTATTATTTGTAATG 695316 Query 2086 CTTCTTCCTTTGAAGAAGCATTTAACGCCTCGGAGGCTGCATCATTAACTGTCTGCTGAC 2145 | | || | || ||| ||| | ||| || | | | ||| || ||| |||| || Sbjct 695315 TTGCATCTCTAGACCAAGAATTAATCGCTTCAGCGTATACATATGCAATTGTTTGCTTAC 695256 Query 2146 CTCCTCTAGCAGATCTTCCGTCGACTTGAAAATGACCCCATTCGACGTAATCACCGTCCT 2205 || |||||||||||| || | || ||||| ||| || || ||||| || || |||| Sbjct 695255 ATCTCCTAGCAGATCTTTGATCAATTTCAAAATCACCTCAATCTACGTACTCTCCCTCCT 695196 Query 2206 TCTCGATGTAGGACTTGACATCAGAGGATGATTTTGCACTCTGTATATTGGCATGGGAGA 2265 | || ||||| || || |||||||||| | |||| ||| || | ||| | |||| | Sbjct 695195 TTTCAATGTACGAGTTAACATCAGAGGCTAATTTAGCAGATTGAACATTTGTATGGAATT 695136 Query 2266 CGGAAGAGGTGTTTGGATGTTTGAGGTCGAAGAATCTGCAATTCGTGCACTGGAACTTTC 2325 | || |||| || ||||| | |||||| || || ||| || | ||| |||| Sbjct 695135 AGATAGTTTTGTTAGGGTGTTTTATGTCGAAAAACCTTTGATTGATGGAACAGAA-TTTC 695077 Query 2326 CTT-CGAATTGAATGAGAGCATGCAGATGCGGTTCCCCATTCTCGTGAAGTTCTCTGCA 2383 ||| ||| || | || ||| || |||||||| || ||| |||| ||| || Sbjct 695076 CTTGTGAACTGGAGAAGTATGTGCGAATATGGTTCCCCGTTGCTGTGTAGTTTTCTACA 695018 >seq1694 Length=789422 Score = 132 bits (146), Expect = 8e-28 Identities = 161/218 (74%), Gaps = 6/218 (3%) Strand=Plus/Minus Query 1515 AATTTTGCATTGTGTATCGTCCAGTTTCGTAATGCTGTGTTTTCCTCTTTGTCGAGGAAA 1574 |||| |||||| || | |||||| || | || |||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1575 TCTTTATAACTGGAC---CCTTCGCCAGGATTGCAAAGCACGATTGATGGGATACCACCT 1631 |||||||| |||| ||||| || ||||| || | |||||||||| ||| ||| | Sbjct 599812 TCTTTATA---GGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACAT 599756 Query 1632 TTAATTTGAACAGGCTTGCCGTATTTGCAATTTGATTGCCAGTCCTTTTGAGCCCCAATC 1691 |||||||||||| | || || || ||||||| |||||| || ||||| ||||||| Sbjct 599755 TTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATA 599696 Query 1692 AATTCTTTCCAGTGCTTTAGCTTTAGATAGGTGGGCGC 1729 ||||||||| | ||||| | ||||| || ||||| || Sbjct 599695 AATTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGC 599658 Score = 123 bits (136), Expect = 4e-25 Identities = 232/338 (69%), Gaps = 5/338 (1%) Strand=Plus/Minus Query 2063 TTTCTCTTTTATTATTTGCATGGCTTCTTCCTTTGAAGAAGCATTTAACGCCTCGGAGGC 2122 |||||||||||||||||| | | | | || | || || ||| | | | || | | Sbjct 599345 TTTCTCTTTTATTATTTGTAATGTTGCATCTCTGGACCTAGAATTAATCACTTCAGTGTA 599286 Query 2123 TGCATCATTAACTGTCTGCTGACCTCCTCTAGCAGATCTTCCGTCGACTTGAAAATGACC 2182 | || | |||||| |||| || || |||||||||||||| |||| |||||||| ||| Sbjct 599285 TACACCTGCAACTGTTTGCTTACATCTCCTAGCAGATCTTCCATCGATTTGAAAATCACC 599226 Query 2183 CCATTCGACGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGGATGATTTTGC 2242 ||| || ||||| || || ||||| || ||||| || || |||| ||||| |||||||| Sbjct 599225 CCAATCTACGTAGTCTCCCTCCTTTTCAATGTATGATTTAACATTAGAGGCTGATTTTGT 599166 Query 2243 ACTCTGTATATTGGCATGGGAGACGGAAGAG--GTGTTTGGATGTTTGAGGTCGAAGAAT 2300 | ||| | | | | |||| | ||| || |||| || ||| | |||||| || Sbjct 599165 AGACTGAACACTTGGATGG--AATTGAATAGTTCTGTTAGGGTGTGGTATGTCGAA-AAC 599109 Query 2301 CTGCAATTCGTGCACTGGAACTTTCCTTCGAATTGAATGAGAGCATGCAGATGCGGTTCC 2360 || || || || ||| |||||| ||||| | || | || | ||| |||||| Sbjct 599108 CTTTGATAGGTTCAACAGAATTTTCCTGTGAATTAGAGAAGTACGTGTAAATGTGGTTCC 599049 Query 2361 CCATTCTCGTGAAGTTCTCTGCAGATTCTGATATATTT 2398 || || || | ||||| ||| | ||| || |||| Sbjct 599048 CCGTTGCGGTCTAATTCTCAGCACACTCTTATGAATTT 599011 Score = 89.7 bits (98), Expect = 9e-15 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1554 TTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGACCCTTCGCCAGGATTGCAAAGCACG 1613 ||||||||||| || | ||||||| | || | ||||| | ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1614 ATTGATGGGATACCACCTTTAATTTGAACAGGCTTGCCGTATTTGCAATTTGATTGCCA 1672 ||||||||||| ||||||||||||| ||| || || || || |||||||| |||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8390095292136