Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_017001.1 Length=2620 Score E Sequences producing significant alignments: (Bits) Value seq1694 102 1e-18 seq519 100 5e-18 seq1129 98.7 2e-17 >seq1694 Length=789422 Score = 102 bits (112), Expect = 1e-18 Identities = 179/258 (69%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1510 TTTTCCTCTTTGTCGAGGAAAGATTTATAACTGGCCCCCTCGCCAGGATTGCAAAGCACG 1569 |||||||||| || ||||| |||||| || || || || ||||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1570 ATGCATGGGATACCACCTTTAATTTGAACTGGCTTACCGTATTTGCAGTTTGATTGCCAG 1629 || ||| ||| ||| |||||||||||| | || || || ||||| | |||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1630 TCCCTTTGGGCCCCGATAAGTTCTTTCCAGTGCTTTAACTTT-AGATAGTGCGGTGCGAC 1688 || |||| |||| |||| ||||||| | ||||| | |||| || |||| || || | Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGC 599655 Query 1689 ATCATCAATTACGTTATACTGCACATCGTTTGAGTAGACCCTTGAATTGAAATCGAGGTG 1748 ||||||||| | |||| | |||| || || | || | |||||||| ||| Sbjct 599654 ATCATCAATGTCATTATCTGGTGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTG 599595 Query 1749 ACCACTCAAGTAATTGTG 1766 ||| || | |||||| || Sbjct 599594 ACCGCTTATGTAATTATG 599577 >seq519 Length=3254320 Score = 100 bits (110), Expect = 5e-18 Identities = 157/222 (71%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 1490 TCCAACTATTCAAAGCTGAGTTTTCCTCTTTGTCGAGGAAAGATTTATAACTGGCCCCCT 1549 ||||| | || | |||| |||||||| || || |||||| |||||| || |||| Sbjct 1742271 TCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCT 1742330 Query 1550 CGCCAGGATTGCAAAGCACGATGCATGGGATACCACCTTTAATTTGAACTGGCTTACCGT 1609 | | ||| ||| | ||||| ||||||| ||||||||||||| ||| | || | Sbjct 1742331 CACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAA 1742390 Query 1610 ATTTGCAGTTTGATTGCCAGTCCCTTTGGGCCCCGATAAGTTCTTTCCAGTG----CTTT 1665 | ||||| || |||||| || |||| |||| || | ||||||||| || || Sbjct 1742391 ACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTAC 1742450 Query 1666 AACTTTAGATA-GTGCGGTGCGACATCATCAATTACGTTATA 1706 | ||||| || ||| || || ||||||||||| || ||||| Sbjct 1742451 ATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 >seq1129 Length=1508174 Score = 98.7 bits (108), Expect = 2e-17 Identities = 143/198 (72%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 1510 TTTTCCTCTTTGTCGAGGAAAGATTTATAACTGGCCCCCTCGCCAGGATTGCAAAGCACG 1569 ||||||||||| || |||||| |||||| | || || || || ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1570 ATGCATGGGATACCACCTTTAATTTGAACTGGCTTACCGTATTTGCAGTTTGATTGCCAG 1629 || |||||| |||||||||| |||| || || || || ||||| || |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1630 TCCCTTTGGGCCCCGATAAGTTCTTTCCAGTGCTTTAACTTT-AGATAGTGCGGTGCGAC 1688 | | ||| | |||| || | |||||| | ||||| | |||| || |||| || | || Sbjct 679295 T-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTAC 679238 Query 1689 ATCATCAATTACGTTATA 1706 |||||| || || ||||| Sbjct 679237 ATCATCTATGACATTATA 679220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8274899475768