Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_017987.1 Length=2751 Score E Sequences producing significant alignments: (Bits) Value seq519 95.1 2e-16 seq1129 93.3 7e-16 seq1694 78.8 2e-11 >seq519 Length=3254320 Score = 95.1 bits (104), Expect = 2e-16 Identities = 251/378 (66%), Gaps = 9/378 (2%) Strand=Plus/Plus Query 2231 CCTCTAGCAGATCTTCCGTCGACCTGAAACTCTCCCCAGTCGAGGGTGTCTCCGTCCTTG 2290 || |||||||||||||| || | ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2291 TCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGT 2350 ||||| || || || || | ||| | ||||||| |||| ||| ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2351 ACTGACCGGGTTGGG-GATACCAGATCGAAGAATCTGTTATTTTGGCACTTGTATTTTCC 2409 | | | | | ||| |||| | || || |||| | ||| ||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATA-TATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2410 CTCGAACTGAATGAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGAt 2469 ||| || || || || || | ||| || ||| | ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2470 tttgatgaattttttgtttgttggggttttgaggttttgTAATTGGGAAAGTGTCTCTTC 2529 | | ||||||||| ||||| ||| |||||| ||| | || ||| | || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2530 TTTGGTGAGAGAGCAT-TGGGGATAAGTAAGAAAGAAATTTTTGGCATTTATTAAAAACC 2588 ||| ||||| || ||| | |||| |||| || || ||||||| ||||||| ||||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTTATTCTAAACC 1743499 Query 2589 GTTTTGGGGGTGCCATTT 2606 | ||| ||||||| Sbjct 1743500 TT-----GGGAGCCATTT 1743512 >seq1129 Length=1508174 Score = 93.3 bits (102), Expect = 7e-16 Identities = 131/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 1295 TTTCCTCAGGTTGTAATTGAACTGGACTTGGA-CTGTGATGACGTCGTGGTTCGTCGAGA 1353 |||||| | |||||| |||||||| | |||| || | |||| || |||| | | || Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCT-ATGATGTTGTGGATGTTGTTGA 693717 Query 1354 ACGGTCTCTCGTGGTGCTGGGTTATCTTGAAATACAGGGGATTGTTGACCGTCCAGATAT 1413 |||||||| ||||| || ||||||||| |||| ||| ||| | || ||| ||| Sbjct 693716 ACGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAGGGGGAATT-TAAACTTCCCAAGTAT 693658 Query 1414 ATACGCCATTCTCTGCCTGAGTTGCAGTGATGGGTTCCCCGGTGCGAAAATCCATGGTT 1472 |||||||||| | | || ||| ||| ||| ||||| ||| ||||||||||| ||| Sbjct 693657 ATACGCCATTATTTCACTAAGTCGCAATGAGATATTCCC-GGTACGAAAATCCATCGTT 693600 >seq1694 Length=789422 Score = 78.8 bits (86), Expect = 2e-11 Identities = 128/179 (72%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 1305 TTGTAATTGAACTGGACTTGGA-CTGTGATGACGTCGTGGTTCGTCGAGAACGGTCTCTC 1363 ||||| |||||||| | ||||| || | || | ||||||||| | ||| ||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCT-ATAATGTCGTGGTTGTTGTTGAATGGTGTCCT 596583 Query 1364 GTGGTGCTGGGTTATCTTGAAATACAGGGGATTGTTGACCGTCCAGATATATACGCCATT 1423 | ||| | |||||||||||||| || |||| || ||| |||||||||||| Sbjct 596582 CTAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1424 CTCTGC-CTGAGTTGCAGTGATGGGTTCCCCGGTGCGAAAATCCATGGTTTGCGCAATT 1481 | ||| | ||| |||||| ||||||| |||| ||||||||| ||| |||||| Sbjct 596522 GT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATT 596465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8694084251996