Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_018090.1 Length=2741 Score E Sequences producing significant alignments: (Bits) Value seq3069 80.6 5e-12 >seq3069 Length=10854949 Score = 80.6 bits (88), Expect = 5e-12 Identities = 153/223 (69%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 1281 CAATGCTTTCCTCAGGTTGTAGTTGAACTGTATTCGTGCCGTTATTATGTCGTGGTTCGA 1340 ||| |||||||| |||||| ||||||| ||||| | | ||| |||||||||| || Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGT-CGT 3754459 Query 1341 CAGGAAA-GGCCTGCTGTGGTGGTCTGTCATCCTGAAATATAGGGGATTTGGAACCGTCC 1399 ||| || || || ||||| ||| | | ||||||||||||||||||| || | Sbjct 3754460 TGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCTC 3754519 Query 1400 AGATAAAGGCGCCATTCTCGGCTTGAGCTGCAGTGATGAACTCCCCTGTGCGTAAATCCA 1459 | ||| | || |||| | | | ||| | ||||| | ||| ||||| |||| || Sbjct 3754520 AAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATACA 3754579 Query 1460 TGGTTGTGGCAGGAAATTGCTACGAAGTAGGAGCAGCCGCATT 1502 | ||| | ||| ||| || | |||| | ||| || |||| Sbjct 3754580 TTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATT 3754622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8662085414116