Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_018457.1 Length=2623 Score E Sequences producing significant alignments: (Bits) Value seq1129 89.7 9e-15 >seq1129 Length=1508174 Score = 89.7 bits (98), Expect = 9e-15 Identities = 234/353 (66%), Gaps = 12/353 (3%) Strand=Plus/Minus Query 1515 TTTTCCTCTTTGTCGAGGAAAGATTTATAGCTGGAGCCCTCGCCAGGATTGCAAAGTATA 1574 ||||||||||| || |||||| |||||||| | || || || ||||| || | || Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1575 ATGCAAGGAACCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAG 1634 || | || | ||||||||| |||| || || || || ||||| || |||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1635 TCTTTTTGAGCACCTATCAATTCCTTCCAATGCTTTAACTTTAGATATTGCGGTGCGATG 1694 |||||||| | || ||||| || ||| ||||||| | ||||| || || | | Sbjct 679295 TCTTTTTG-CCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1695 TCATCTATTACGTTGTACTGCACATCAT--TTGAATA--GACCCGCGAATTGAAATCGAG 1750 |||||||| || || || |||||| | ||||| || | |||||||| | Sbjct 679236 TCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTG----TTGAAATCTAA 679181 Query 1751 GTGA---CCGGACAAGTAGTTATGGGACCCTAGCGCACGTGCCCACATGGTCTTCCCCGT 1807 |||| ||| | ||| ||||| | || | || ||| | | || || || | Sbjct 679180 GTGATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTAT 679121 Query 1808 TCGAGAGTCACCCTCGATTATTATACTAATAGGTCTTTCCGGCCGCGCAGCGG 1860 |||| || || || |||||||| ||||||| || |||| |||| ||| Sbjct 679120 TCGACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8284499127132