Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_018716.1 Length=2616 Score E Sequences producing significant alignments: (Bits) Value seq1129 165 1e-37 seq519 158 2e-35 seq1694 147 4e-32 >seq1129 Length=1508174 Score = 165 bits (182), Expect = 1e-37 Identities = 189/250 (76%), Gaps = 3/250 (1%) Strand=Plus/Minus Query 1479 AATTTCGCATTTTTAAGCGTCCACGCCTTCAGACCTGCATTTTCCTCTTTCTCGAGGAAA 1538 |||| ||||||| |||||| | ||| || | ||||||||||||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1539 TCTTTATAGCT-GCACCCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTT 1597 |||||||||| ||||| || |||||||| |||| | ||||||||||| ||||| Sbjct 679394 TCTTTATAGCACGCACCT-TCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTT 679336 Query 1598 AATTTGAACTGGCTTTCCATATTTACAGTTGGATTGCCAATCCTTTTGGGCCCCAATCAA 1657 |||| |||| || || ||||| || || || |||||||| ||||| | |||||||||| Sbjct 679335 AATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAA 679277 Query 1658 CTCTTTCCAGTGCTTTAGCTTTAGGTACTGCGGAGTGACATCATCGATAACGTTATACTC 1717 |||||| | ||||| | ||||| ||| ||||| |||||||| || || ||||| Sbjct 679276 ATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATATGT 679217 Query 1718 CACATCATTG 1727 |||||||| Sbjct 679216 TGCATCATTG 679207 Score = 78.8 bits (86), Expect = 2e-11 Identities = 226/340 (66%), Gaps = 16/340 (5%) Strand=Plus/Minus Query 2128 GATCGATTTGAAATTCTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAGGTCTTGA 2187 |||| |||| ||| || || |||| | | | ||||| || || || | ||| | || | Sbjct 695237 GATCAATTTCAAAATCACCTCAATCTACGTACTCTCCCTCCTTTTCAATGTACGAGTTAA 695178 Query 2188 CATCAGATGCTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGG 2247 ||||||| ||| ||||||| |||| |||| |||||| | | | | ||| ||| Sbjct 695177 CATCAGAGGCTAATTTAGCAGATTGAACATTTGTATGGAATTA-GATAGTTTTGTTAGGG 695119 Query 2248 AGACG-AGGTCGAAGAATCTTTCATTA---GCACATTGGTATTTACCTTCGAACTGGATA 2303 | | |||||| || |||| ||| | ||| | |||| | | |||||||| | Sbjct 695118 TGTTTTATGTCGAAAAACCTTTGATTGATGGAACA---GAATTTCCTTGTGAACTGGAGA 695062 Query 2304 AGCACATGGAGATGAGGCTCCCCATTTTCGTGTAATTCTCTGGACACACGAATAAACTTG 2363 || | || || || ||||| || ||||| || ||| |||| || || || Sbjct 695061 AGTATGTGCGAATATGGTTCCCCGTTGCTGTGTAGTTTTCT----ACACTTATGAATTTT 695006 Query 2364 ATATTTGTAGGTGTTTTTAAC--TTCTGTAATTGCAAAAGAGCCCCTTCTTTTGTTAAAG 2421 ||||||||||| || || | || || || | |||| | | ||| ||| | || Sbjct 695005 ATATTTGTAGG-GTAGTTGAGGATTTTGAGAT-GATGAAGACCATCATCTATTGAGAGAG 694948 Query 2422 AGCACCTAGGGTATGTGAGGAAATAGTTTTTGGCGTTTAT 2461 | || |||||| | |||||||||||||||||| ||||| Sbjct 694947 AACATCTAGGGAAAGTGAGGAAATAGTTTTTGCTATTTAT 694908 >seq519 Length=3254320 Score = 158 bits (174), Expect = 2e-35 Identities = 191/257 (74%), Gaps = 6/257 (2%) Strand=Plus/Plus Query 1479 AATTTCGCATTTTTAAGCGTCCACGCCTTCAGACCTGCATTTTCCTCTTTCTCGAGGAAA 1538 |||| ||||||| ||| |||| ||| ||| || |||||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1539 TCTTTATA-GCTGCACCCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTT 1597 |||||||| | |||| ||||| | | ||| ||||| |||||||||||||| || ||||| Sbjct 1742312 TCTTTATAGGATGCA-CCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1598 AATTTGAACTGGCTTTCCATATTTACAGTTGGATTGCCAATCCTTTTGGGCCCCAATCAA 1657 ||||| ||| | || | | | || || || ||||||||| ||||| |||||||||| Sbjct 1742371 AATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1658 CTCTTTCCAGTG----CTTTAGCTTTAGGTACTGCGGAGTGACATCATCGATAACGTTAT 1713 |||||||| || || | ||||| ||| |||| |||||||| || || |||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTAT 1742490 Query 1714 ACTCCACATCATTGGAG 1730 | |||||||| || Sbjct 1742491 ATGTTGCATCATTGCAG 1742507 >seq1694 Length=789422 Score = 147 bits (162), Expect = 4e-32 Identities = 216/303 (71%), Gaps = 2/303 (1%) Strand=Plus/Minus Query 1479 AATTTCGCATTTTTAAGCGTCCACGCCTTCAGACCTGCATTTTCCTCTTTCTCGAGGAAA 1538 |||| ||||||| |||||||| ||| || | |||||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1539 TCTTTATAGCT-GCACCCCTCTCCTGGATTGCACAGCACGATTGATGGGATCCCTCCTTT 1597 ||||||||| ||||| || |||||||| |||| |||||||||| ||| | | ||| Sbjct 599812 TCTTTATAGGACGCACCT-TCACCTGGATTACACAATACGATTGATGAGATGACACATTT 599754 Query 1598 AATTTGAACTGGCTTTCCATATTTACAGTTGGATTGCCAATCCTTTTGGGCCCCAATCAA 1657 ||||||||| | || ||||| || || | ||||||||| ||||| ||||||| || Sbjct 599753 AATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAA 599694 Query 1658 CTCTTTCCAGTGCTTTAGCTTTAGGTACTGCGGAGTGACATCATCGATAACGTTATACTC 1717 |||||| | ||||| | ||||| ||| |||| ||||||| || | |||| Sbjct 599693 TTCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTATCTGG 599634 Query 1718 CACATCATTGGAGTAAACCCTAGCATTGAAATCAAGATGACCGCTCAGATAATTATGTGT 1777 ||||||| || | || ||||||||| |||||||| | |||||||| | Sbjct 599633 TGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATGATT 599574 Query 1778 ACC 1780 ||| Sbjct 599573 ACC 599571 Score = 100 bits (110), Expect = 5e-18 Identities = 104/134 (78%), Gaps = 2/134 (1%) Strand=Plus/Minus Query 1505 CTTCAGACCTGCATTTTCCTCTTTCTCGAGGAAATCTTTATAGC-TGCACCCCTCTCCTG 1563 |||||| | ||||||||||||| || | ||||||| | ||| |||||| || | | Sbjct 596250 CTTCAGGGCCACATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCT-TCACTTA 596192 Query 1564 GATTGCACAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCATATTTAC 1623 ||||||||| |||||||||||||| || |||||||||| ||| || || ||||| || | Sbjct 596191 GATTGCACAATACGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGC 596132 Query 1624 AGTTGGATTGCCAA 1637 | || ||||||| Sbjct 596131 AATTACTTTGCCAA 596118 Score = 93.3 bits (102), Expect = 7e-16 Identities = 218/324 (67%), Gaps = 4/324 (1%) Strand=Plus/Minus Query 2129 ATCGATTTGAAATTCTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAGGTCTTGAC 2188 |||||||||||| || || |||| | | ||||||| || || || | ||| | || || Sbjct 599243 ATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCAATGTATGATTTAAC 599184 Query 2189 ATCAGATGCTGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGA 2248 || ||| |||||||| | ||||| |||||||||| || | || ||| ||| Sbjct 599183 ATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATAGTTCT-GTTAGGGT 599125 Query 2249 GACG-AGGTCGAAGAATCTTTCATTAGCACATTGGTATTTACCTTCGAACTGGATAAGCA 2307 | | | |||||| || |||| || | || | |||| ||| ||| | || ||| | Sbjct 599124 GTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTGAATTAGAGAAGTA 599066 Query 2308 CATGGAGATGAGGCTCCCCATTTTCGTGTAATTCTCTGGACACACGAATAAACTTGATAT 2367 | || | ||| || ||||| || || |||||||| | |||| | || || |||| || Sbjct 599065 CGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTTATGAATTTGAGAT 599006 Query 2368 TTGTAG-GTGTTTTTAACTTCTGTAATTGCAAAAGAGCCCCTTCTTTTGTTAAAGAGCAC 2426 || ||| || || || | || || |||| | | |||||| | |||||| Sbjct 599005 TTATAGCGTAGTTGGGGTTTTTTGAAATGATGAAGAACATCATCTTTTAAGAGAGAGCAT 598946 Query 2427 CTAGGGTATGTGAGGAAATAGTTT 2450 || || | ||| ||||||||||| Sbjct 598945 CTTGGTAAAGTGTGGAAATAGTTT 598922 Score = 87.8 bits (96), Expect = 3e-14 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 2255 GTCGAAGAATCTTTCATTAGCACATTGGTATTTACCTTCGAACTGGATAAGCACATGGAG 2314 |||||| || ||| ||| | |||| | |||| ||| |||||||| ||| || || | Sbjct 588249 GTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGCAA 588190 Query 2315 ATGAGGCTCCCCATTTTCGTGTAATTCTCTGGACACACGAATAAACTTGATATTTGTAGG 2374 ||| || ||||| | ||| | ||||||| |||||| || || |||| ||||||| | Sbjct 588189 ATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTAAG 588130 Query 2375 TGTTTTTAACTTCTGTAATTGCAAAAGAGCCCCTTCTTTTGTTAAAGAGCACCTAGGGTA 2434 || | || | | || |||| | | ||||||| | ||| || || ||| | Sbjct 588129 ATAGTTGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCTTGGGAA 588070 Query 2435 TGTGAGGAAATAGTTTTTGGCGTTTATGCGAAA 2467 |||||||||||||||| | ||||| | ||| Sbjct 588069 AGTGAGGAAATAGTTTTAGCTATTTATTCTAAA 588037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8262099940616