Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_018717.1 Length=2599 Score E Sequences producing significant alignments: (Bits) Value seq519 123 4e-25 seq1694 118 2e-23 seq1129 116 6e-23 >seq519 Length=3254320 Score = 123 bits (136), Expect = 4e-25 Identities = 170/235 (72%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1465 GCATTCTTTAGAGTCCAGTTTCTAAGAGACGCATTATCTTCTTTCTCGAGGAAAGCTTTA 1524 ||||| | ||| |||| || | |||| |||| || || || || |||||| ||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1525 TAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATTTGA 1584 ||| | |||||| | ||| ||| | |||||||||||||| || |||||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1585 ACTGGCTTTCCG-TACTTACAATTTGATTGCCAGTCTTTTTGGGCCCCAAGGAGTTCTTT 1643 || | |||||| |||| ||||| |||||| |||||||| |||||| | |||||| Sbjct 1742378 AC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTT 1742436 Query 1644 CCAGTG----CTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATA 1694 ||| || || | ||||| || || || || ||||||||||| ||||| Sbjct 1742437 CCAATGCTACCTACATCTTTAAGTATGTGGGAGCTACATCATCAATGACATTATA 1742491 Score = 89.7 bits (98), Expect = 8e-15 Identities = 248/370 (67%), Gaps = 8/370 (2%) Strand=Plus/Plus Query 2083 TGCTGACCTCCTCGAGCAGATCTGCCGTCGATCTGGAATTTTCCCCATTCAATTGTA-TC 2141 |||| || ||| | ||||||||| || || || || || | | || || | ||| || Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTAC-GTAGTC 1743191 Query 2142 TCCATCTTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGG 2201 ||| || || |||||||| || || || | ||| | ||||||| |||| || | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2202 ATGGAAATGTGTTGACCTGGATGGG-GAGACCAGATCGAAGAATCTATTATTCGTGCACT 2260 |||||| || | | ||| ||| || | | || || |||| | ||| ||||| Sbjct 1743252 ATGGAATTGAATGGTTCTGTTAGGGTGATATATG-TCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2261 GGTATTTTCCTTCGAATTGGATGAGCATGTGGATATGAGGATCCCCATTTTCGTGAAGTT 2320 | |||| ||| ||| ||||| || | || | ||| || ||||| || ||| |||| Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2321 CTCTGCAGATTTTTATGAACTTCTTGTTAACTGGGGTT-TTGATAGCTTGAATTTGGGAA 2379 || |||| | | ||||||| || | | | | |||| |||| || | || | Sbjct 1743371 CTTTGCACACTCTTATGAATTT-TAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGA 1743429 Query 2380 AGTGCTTCCTCTTTAGTGAGAGAGCA-CTGGGGATAAGTGAGGAAATAGTTTTTGGAGTT 2438 || || || ||||| ||||| || || || |||| |||||||||||| |||||| || Sbjct 1743430 AGAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATT 1743488 Query 2439 CACTCTAAAC 2448 | ||||||| Sbjct 1743489 TATTCTAAAC 1743498 >seq1694 Length=789422 Score = 118 bits (130), Expect = 2e-23 Identities = 204/295 (69%), Gaps = 10/295 (3%) Strand=Plus/Minus Query 1465 GCATTCTTTAGAGTCCAGTTTCTAAGAGACGCATTATCTTCTTTCTCGAGGAAAGCTTTA 1524 ||||| | || ||||| || | || | | |||| || |||| || ||||| ||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1525 TAGCTGGAACCCTCGCCAGGATTGCAGAGCACGATTGATGGGATACCTCCTTTAATTTGA 1584 ||| | ||| || || ||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1585 ACTGGCTTTCCGTACTTACAATTTGATTGCCAGTCTTTTTGGGCCCCAAGGAGTTCTTTC 1644 || | || || ||||| |||| |||||| |||||||| |||||| | ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1645 CAGTGCTTTAGCTTTAGATACTGCGGTGCGACGTCATCAATGACGTTATACTCCACTGCA 1704 | ||||| | ||||| || || || | ||||||||| | ||| || |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTGGGAGCTGCATCATCAATGTCATTA---TCTGGTGCA 599630 Query 1705 T-----TTGAATAGACCCTAGAATTGAAATCAAGATGACCGCTCAAGTAATTATG 1754 | | ||||| | | ||||||||| |||||||| | ||||||||| Sbjct 599629 TCATTCTAGAATACTGATTTG--TTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 78.8 bits (86), Expect = 2e-11 Identities = 90/121 (74%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 1496 CATTATCTTCTTTCTCGAGGAAAGCTTTATAGCTGGAACCCTCGCCAGGATTGCAGAGCA 1555 |||| || ||||| || | |||| || | ||| | ||| || | ||||||| | | Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATA 596180 Query 1556 CGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTACTTACAATTTGATTGCC 1615 ||||||||||||| || |||||||||| ||| || || || ||||| ||||| ||||| Sbjct 596179 CGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCC 596120 Query 1616 A 1616 | Sbjct 596119 A 596119 >seq1129 Length=1508174 Score = 116 bits (128), Expect = 6e-23 Identities = 146/199 (73%), Gaps = 1/199 (1%) Strand=Plus/Minus Query 1496 CATTATCTTCTTTCTCGAGGAAAGCTTTATAGCTGGAACCCTCGCCAGGATTGCAGAGCA 1555 |||| || ||||| || |||||| ||||||||| | ||| || || ||||| || | | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1556 CGATTGATGGGATACCTCCTTTAATTTGAACTGGCTTTCCGTACTTACAATTTGATTGCC 1615 ||||||||||| ||||||||| |||| || || || ||||| ||||| ||||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1616 AGTCTTTTTGGGCCCCAAGGAGTTCTTTCCAGTGCTTTAGCTTTAGATACTGCGGTGCGA 1675 | ||||||| | |||||| | |||||| | ||||| | ||||| || || | | Sbjct 679297 AATCTTTTT-GCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1676 CGTCATCAATGACGTTATA 1694 | ||||| ||||| ||||| Sbjct 679238 CATCATCTATGACATTATA 679220 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8207701916220