Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_019034.1 Length=2781 Score E Sequences producing significant alignments: (Bits) Value seq519 78.8 2e-11 >seq519 Length=3254320 Score = 78.8 bits (86), Expect = 2e-11 Identities = 184/275 (67%), Gaps = 2/275 (1%) Strand=Plus/Plus Query 2228 TTGTTTGCCTCCTCTCGCTGATCGTCTATCGATCTGGAATTGGCCCCAGTCGAGGACGTC 2287 ||| || | ||| || || |||| || ||| || || || | | || || | | ||| Sbjct 1743132 TTGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTC 1743191 Query 2288 TCCGTCCTTCTCAAGATATGCCTTGACATCGGAGCTAGACTTAGCTCCCTGAATGTTCGG 2347 ||| ||||| || | |||| || |||| ||| | || |||| |||| || | Sbjct 1743192 TCCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTG 1743251 Query 2348 ATGGAAATGTGCTGACCTGGTTGGG-GATACCAAGTCGAACAATCTGCAATTCGTGAGTC 2406 |||||| || | ||| | ||| |||| | ||| || |||| ||| ||| | Sbjct 1743252 ATGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAAC 1743310 Query 2407 GGACTTTGCCCTCGAATTGGACGAGCACATGCAGATGAGGTTCCCCATTTTGATGCAGTT 2466 || ||| || ||| |||| || ||||||| ||| |||||||| || || |||| Sbjct 1743311 AGAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTT 1743370 Query 2467 CTCTGCAGATTCTTATGAATTTGGGGTTTGAAGGG 2501 || |||| | |||||||||||| | |||| |||| Sbjct 1743371 CTTTGCACACTCTTATGAATTTTAGATTTGTAGGG 1743405 Score = 77.0 bits (84), Expect = 6e-11 Identities = 273/419 (65%), Gaps = 7/419 (2%) Strand=Plus/Plus Query 2086 GAGGAGTGAATATCCTCTCTAAATTGGAATTAAGATTATGAAATTGTAATACATAATCCT 2145 |||| | |||||| | | ||||| ||||| | ||||||| |||||| | || || Sbjct 1748805 GAGGGGCGAATATTCGACCCAAATTAGAATTGAAATTATGATATTGTAGAATGAAACTCT 1748864 Query 2146 TTGGGGCTAATTCTTTAATTAGTCGTAGGGCTTCAGA-CTTACTGCCTGCGTTCAGCGCC 2204 ||||| || ||||| |||| | ||| ||| || ||| ||| | || | ||| Sbjct 1748865 TTGGGTCTTTCTCTTTTATTATTTGTAATGCTGCATCTCTTGGTGCATAA-TTAATCGCT 1748923 Query 2205 TGTGCGTAAGCATCGTTTATTGATTGTTTGCCTCCTCTCGCTGATCGTCTATCGATCTGG 2264 | ||||| |||| | | || || | ||| || | |||| || ||| || || Sbjct 1748924 TCAGCGTATACATCTGCAACTATTTTCTTACATCCCCTAACAGATCTTCCATCAATTTGA 1748983 Query 2265 AATTGGCCCCAGTCGAGGACGTCTCCGTCCTTCTCAAGATATGCCTTGAC--ATCGGAGC 2322 || | |||| || | |||||| ||||| |||| |||| || || ||| || Sbjct 1748984 AAATCATCCCAATCTACATAGTCTCCCTCCTTTTCAATGTATGATTTAACCCATCAAAGG 1749043 Query 2323 TAGACTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAGT 2382 | || ||||| |||| || |||||||| || | || || ||| | | || Sbjct 1749044 TTGATTTAGCATATTGAACATTTGGATGGAATTGAATGGTTCTA-TTAGGGTTTGTATGT 1749102 Query 2383 CGAACAATCTGCAATTCGTGAGTCGGACTTTGCCCTCGAATTGGACGAGCACATGCAGAT 2442 |||| || | ||| ||| | || ||| || ||| | || || ||||||| || Sbjct 1749103 CGAAAAACCATTGATTGGTGCAGCAGAATTTCCCTGTGAACTAGA-GATTACATGCAAAT 1749161 Query 2443 GAGGTTCCCCATTTTGATGCAGTTCTCTGCAGATTCTTATGAATTTGGGGTTTGAAGGG 2501 | ||||||| | || || ||||||||||| | | |||||||||| | |||| |||| Sbjct 1749162 GTGGTTCCCGTTGCTG-TGTAGTTCTCTGCACACTTTTATGAATTTAAGATTTGTAGGG 1749219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8786871496020