Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_019569.1 Length=2647 Score E Sequences producing significant alignments: (Bits) Value seq1129 95.1 2e-16 seq519 91.5 2e-15 >seq1129 Length=1508174 Score = 95.1 bits (104), Expect = 2e-16 Identities = 140/197 (71%), Gaps = 1/197 (1%) Strand=Plus/Minus Query 1534 TTTTCCTCTTTGTCTAGGAAGTCTTTATAGCTGGCCCCCTCTCCAGGATTGCATAGCACG 1593 ||||||||||| |||||||| |||||||||| || || || || ||||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1594 ATTGAAGGGACCCCACCTTCAATCACTCTTGGCTTTCCGTATTTACAGTTTGACTGCCAC 1653 ||||| |||| ||||| ||| | || || || || || || || ||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCA- 679297 Query 1654 TTCTTTTGAGAGCCAATCAGTTCTTTCCAGTGTTTCAACTTTAGGTAATGCGGTGGTACG 1713 |||||| ||||||| |||||| | || |||| ||||| |||| || | ||| Sbjct 679296 ATCTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACA 679237 Query 1714 TCATCAATGACGTTATA 1730 ||||| ||||| ||||| Sbjct 679236 TCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 91.5 bits (100), Expect = 2e-15 Identities = 242/362 (67%), Gaps = 6/362 (2%) Strand=Plus/Plus Query 2119 TGCTGGCCTCCTCTAGCAGATCTGCCGTCGATCTGGAAATCTCCCCATTCGATTGAGTCT 2178 |||| | ||| ||||||||||| || || || || ||||| | || || | ||||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2179 CCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTAGACTTAGCTCCCTGTATGTTTGGA 2238 || ||||| ||||| || || || || | ||| | || |||| || | ||| || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2239 TGGAAATGTGCTGACCTGGTTGGGGAGA-CCAGATCGAAGAATCTGTTATTCTTGCACTG 2297 ||||| || | || ||| ||| || | || || |||| | ||| |||| Sbjct 1743253 TGGAATTGAATGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2298 GTATTTTCCTTCGAACTGGATGAGCACATGGAGATGAGGCTCCCCATTCTCATGAAGTTC 2357 | |||| ||| ||| ||||| || ||||| | ||| || ||||| || || ||||| Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2358 TCGGCAGACTTTGATGAATTTCTTGTTAACTAGGGT-TTCAAGGCTTTGTAATTGGGAAA 2416 | ||| ||| | |||||||| | | | |||||| | ||||||| | || || Sbjct 1743372 TTTGCACACTCTTATGAATTT-TAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2417 GTGCCTCGTCTTTGGTTAGAGAGCA-CTGGGGATATGTAAGGAAATAGTTCTTGGCATTA 2475 | || || ||||| || || || || || |||| | || ||||||| || ||| ||| Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTGCTATTT 1743489 Query 2476 AT 2477 || Sbjct 1743490 AT 1743491 Score = 80.6 bits (88), Expect = 4e-12 Identities = 142/203 (70%), Gaps = 8/203 (4%) Strand=Plus/Plus Query 1534 TTTTCCTCTTTGTCTAGGAAGTCTTTATAGCTGGCCCCCTCTCCAGGATTGCATAGCACG 1593 |||||||| || |||||||| ||||||||| || ||||| | ||| ||| | ||| Sbjct 1742291 TTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACG 1742350 Query 1594 ATTGAAGGGACCCCACCTTCAATC-ACTCTTGGCTTTCCGTAT-TTACAGTTTGACTGCC 1651 ||||| |||| ||||||| ||| | | | |||||| | || || || |||| Sbjct 1742351 ATTGATGGGATGCCACCTTTAATTTAAACGAG--TTTCCGAAACTTGCAATTACTTTGCC 1742408 Query 1652 ACTTCTTTTGAGAGCCAATCAGTTCTTTCCAGTGTTTC----AACTTTAGGTAATGCGGT 1707 | | ||||| ||||||| ||||||||| || | | | ||||| ||| || Sbjct 1742409 AATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGA 1742468 Query 1708 GGTACGTCATCAATGACGTTATA 1730 | ||| ||||||||||| ||||| Sbjct 1742469 GCTACATCATCAATGACATTATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8361296338044