Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_019946.1 Length=2574 Score E Sequences producing significant alignments: (Bits) Value seq1129 174 3e-40 seq1694 159 6e-36 seq519 145 1e-31 >seq1129 Length=1508174 Score = 174 bits (192), Expect = 3e-40 Identities = 277/391 (71%), Gaps = 10/391 (3%) Strand=Plus/Minus Query 1437 AATTTAGCATTTTTGAGAGTCCACTGTTTTAGTGACGCATTTTCCTCTTTGTCGAGGAAA 1496 |||| ||||||| ||| ||| | | || || | ||||||||||||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1497 TCTTTATAGCTCCCCCCGTCTCCTGGATTGCACAGCACGATTGATGGTATGCCCCCTTTA 1556 |||||||||| | | || || |||||||| |||| | ||||||||| | | |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1557 ATTTGAACTGGCTTGCCGTACTTACAGTTGGACTGCCAATCTTTCTGGGCCCCAATCAAC 1616 ||| |||| || || || ||||| || || ||||||||||| | | |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTT-TTGCCCCCAATCAAA 679276 Query 1617 TCTTTCCAGTGCTTTAACTTTAAGT-AGTGCGGTGCGACGTCATCGATGACGTTATATTC 1675 |||||| | ||||| | |||||||| |||| || | || ||||| ||||| |||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATATGT 679217 Query 1676 CACTTCGTTCGAGTAAACCCTAGAATTGAAATCTAA---ATGACCACTCAAGTAATTATG 1732 | || || | | || ||||||||||| ||| || | | ||||||||| Sbjct 679216 TGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTGATGGCCGTTAATGTAATTATG 679157 Query 1733 TGGGCCTAAAGAACGAGCCCACATTGTCTTCCCTGTTCTTGAAT--CACCCTCGACGATG 1790 || | | || || ||| | | || || ||| ||| || | || || | ||| Sbjct 679156 ACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC--GACTTGGGCCTTCAATGATT 679099 Query 1791 ATACTAATAGGTCTTTCCGGCCGCGCAGCGG 1821 ||||| ||||||| || |||| |||| ||| Sbjct 679098 ATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq1694 Length=789422 Score = 159 bits (176), Expect = 6e-36 Identities = 215/297 (72%), Gaps = 2/297 (1%) Strand=Plus/Minus Query 1437 AATTTAGCATTTTTGAGAGTCCACTGTTTTAGTGACGCATTTTCCTCTTTGTCGAGGAAA 1496 |||| ||||||| ||| ||||| | || || | | |||||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1497 TCTTTATAGCTCCCCCCGTCTCCTGGATTGCACAGCACGATTGATGGTATGCCCCCTTTA 1556 ||||||||| | | || || |||||||| |||| |||||||||| ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1557 ATTTGAACTGGCTTGCCGTACTTACAGTTGGACTGCCAATCTTTCTGGGCCCCAATCAAC 1616 |||||||| | || || ||||| || | ||||||||||| || ||||||| || Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1617 TCTTTCCAGTGCTTTAACTTTAAGT-AGTGCGGTGCGACGTCATCGATGACGTTATATTC 1675 |||||| | ||||| | |||||||| |||| || || | ||||| ||| | |||| | Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTGG 599634 Query 1676 CACTTCGTTCGAGTAAACCCTAGAATTGAAATCTAAATGACCACTCAAGTAATTATG 1732 | || ||| || | || |||||||| | ||||| || | ||||||||| Sbjct 599633 TGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTGACCGCTTATGTAATTATG 599577 Score = 100 bits (110), Expect = 5e-18 Identities = 113/150 (75%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1437 AATTTA-GCATTTTTGAGAGTCCACTGTTTTAGTGACGCATTTTCCTCTTTGTCGAGGAA 1495 |||||| |||| || ||| | ||| | || || | | ||||||||||||| || | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1496 ATCTTTATAGCTCCCCCCGTCTCCTGGATTGCACAGCACGATTGATGGTATGCCCCCTTT 1555 |||| | ||| | || || | | ||||||||| ||||||||||| ||||| ||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1556 AATTTGAACTGGCTTGCCGTACTTACAGTT 1585 ||||| ||| || || || ||||| || || Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 145 bits (160), Expect = 1e-31 Identities = 179/242 (74%), Gaps = 6/242 (2%) Strand=Plus/Plus Query 1437 AATTTAGCATTTTTGAGAGTCCACTGTTTTAGTGACGCATTTTCCTCTTTGTCGAGGAAA 1496 |||| |||||||| || |||| | || || | |||||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1497 TCTTTATAGCTCCCCCCGTCTCCTGGATTGCACAGCACGATTGATGGTATGCCCCCTTTA 1556 ||||||||| | || || | | ||| ||||| ||||||||||| ||||| |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1557 ATTTGAACTGGCTTGCCGTACTTACAGTTGGACTGCCAATCTTTCTGGGCCCCAATCAAC 1616 |||| ||| | || | |||| || || ||||||||||| || |||||||||| Sbjct 1742372 ATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAAT 1742431 Query 1617 TCTTTCCAGTG----CTTTAACTTTAAGTA-GTGCGGTGCGACGTCATCGATGACGTTAT 1671 |||||||| || || | ||||||||| ||| || || || ||||| ||||| |||| Sbjct 1742432 TCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTAT 1742490 Query 1672 AT 1673 || Sbjct 1742491 AT 1742492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8127704821520