Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020236.1 Length=2748 Score E Sequences producing significant alignments: (Bits) Value seq519 78.8 2e-11 >seq519 Length=3254320 Score = 78.8 bits (86), Expect = 2e-11 Identities = 230/346 (66%), Gaps = 15/346 (4%) Strand=Plus/Plus Query 2226 GCAGATCTTCCATCGATCTGAAAACTACCCCAGTTGATGTAATCACCGTCCTTTTTGATG 2285 |||||||||||||| || |||||| | | || | | ||| || || ||||||| |||| Sbjct 1743148 GCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATG 1743207 Query 2286 TAGGACTTGACGTCCGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGTATTGGGTGGAG 2345 || || || || | ||| | || |||| || | ||| | ||| |||| ||| Sbjct 1743208 TATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTT 1743267 Query 2346 GTATTAGGGTGTGTGATGTCGAAATGTCTGGGATTACGGAACTGGGCTTTACCTTTGAAT 2405 | |||||||| ||||| ||| || |||| | | | ||||||| |||| Sbjct 1743268 CTGTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAAG 1743327 Query 2406 TGGATGAGCACATGGAGATGCAGTGACCCATTCTTATGTTTTTCTTGTGC-TACTCGTAT 2464 ||||| || ||||| | ||| || ||| || | ||| ||||| ||| |||| ||| Sbjct 1743328 TGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTT-TGCACACTCTTAT 1743386 Query 2465 GAATAATTTATCGGATGGGCATGCTATTTG-----TTGGATAAGTTCTAGGGCTTGCTCT 2519 |||| |||| ||| | | | || ||| || || | | | || || | ||| Sbjct 1743387 GAAT--TTTA---GATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCT 1743441 Query 2520 TTCGGAATGGGACAT-TTGGGATAAGTGAGAAAGATATTTTTTGCT 2564 || | | || |||| |||||| ||||||| || || |||||||| Sbjct 1743442 TTTGTGAGGGAACATCTTGGGA-AAGTGAGGAA-ATGATTTTTGCT 1743485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8684484600632