Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020253.1 Length=2676 Score E Sequences producing significant alignments: (Bits) Value seq1129 123 4e-25 seq519 107 3e-20 seq1694 80.6 5e-12 >seq1129 Length=1508174 Score = 123 bits (136), Expect = 4e-25 Identities = 178/242 (74%), Gaps = 8/242 (3%) Strand=Plus/Minus Query 1530 AATTTTGCATTGTGGAGTGTCCACGACTTTAATGCTGCATTCTCCTCTTTGTCTAGGTAC 1589 |||| |||||| ||||| ||| | ||| | || |||| |||||||| |||||| | Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1590 TCTTTATAACTGACTC-CCTCCCCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTT 1648 |||||||| | || | ||| | |||||||| || | | ||||||||| | ||||| Sbjct 679394 TCTTTATAGC--ACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTT 679337 Query 1649 TAATTTTGAACTGGCTTTTCCGTACTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAAT 1708 ||||| |||| || ||| || ||||||||||| ||||| |||||||| | ||||| Sbjct 679336 TAATTA-GAACGGG-TTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCCAAT 679280 Query 1709 CAACTCCTTCCAGTGCTTTAACTTT-AGATATTGCGGGTTGACGTCATCAATGACGTTGT 1767 ||| || ||| | ||||| | |||| || | || | ||| || ||||| ||||| || | Sbjct 679279 CAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTT-ACATCATCTATGACATTAT 679221 Query 1768 AT 1769 || Sbjct 679220 AT 679219 >seq519 Length=3254320 Score = 107 bits (118), Expect = 3e-20 Identities = 176/246 (72%), Gaps = 11/246 (4%) Strand=Plus/Plus Query 1530 AATTTTGCATTGTGGAGTGTCCACGACTTTAATGCTGCATTCTCCTCTTTGTCTAGGTAC 1589 |||| ||||| || || |||| ||| | ||| |||| ||||| || |||||| | Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1590 TCTTTATAACTGACTCCCTCCCCCTGGATTGCAGAGCACGATTGATGGTATCCCACCTTT 1649 |||||||| | ||||| | | ||| ||| | ||||||||||| || |||||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACT-TAGATAGCACAATACGATTGATGGGATGCCACCTTT 1742370 Query 1650 AATTTTGAACTGGCTTTTCCG-TACTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAAT 1708 || ||| ||| | |||||| |||||||||| ||||| |||||||| | ||||| Sbjct 1742371 AA-TTTAAAC--GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAAT 1742427 Query 1709 CAACTCCTTCCAGTG----CTTTAACTTTAGATAT-TGCGGGTTGACGTCATCAATGACG 1763 ||| || ||||| || || | ||||| ||| || | | | || ||||||||||| Sbjct 1742428 CAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGGAGCT-ACATCATCAATGACA 1742486 Query 1764 TTGTAT 1769 || ||| Sbjct 1742487 TTATAT 1742492 Score = 80.6 bits (88), Expect = 5e-12 Identities = 193/280 (69%), Gaps = 14/280 (5%) Strand=Plus/Plus Query 1184 ATGTCGTCCAGA-CTTGGAAGTTCAGGAATGCCTTGTGGAGATCCAATGCTTTCCTGAGG 1242 |||||||||||| |||| || | | ||||||| || | | | | ||||||||| Sbjct 1741827 ATGTCGTCCAGATCTTGAAAAAT-ATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAGA 1741885 Query 1243 TTGTGGTTGAACCGTATCTGTACGTGGTACAC-TC-TGGTCGTCGTGTACAACATGTCCT 1300 |||| |||||| ||||||| | | | || |||| || || || | | |||| Sbjct 1741886 TTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGT-TAAATTGTCTCCT 1741944 Query 1301 CTA----CGTGGTATATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATAGACGCCA 1356 || |||| ||| ||||||||| |||| ||||| || ||||| ||| || ||| Sbjct 1741945 CTGGTTTCGTGTTAT--CTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCA 1742002 Query 1357 TTCTCTGC-CTGAGGCGCAGTGATGAGTTCCCCGGTGCGTGAATCCATGATTGCTGCAGT 1415 || | ||| ||||| | ||||| ||||||||||| | ||||||| || || |||| Sbjct 1742003 TTGT-TGCACTGAGCCT-AGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGT 1742060 Query 1416 TGATGTGGACGTAGACGGTGCACCCGCACTGTATATCAAT 1455 | ||||| ||| |||| || || | ||||||||| Sbjct 1742061 TAATGTGTTGGTAATATATGCAACCACAGTATATATCAAT 1742100 >seq1694 Length=789422 Score = 80.6 bits (88), Expect = 5e-12 Identities = 114/154 (74%), Gaps = 6/154 (4%) Strand=Plus/Minus Query 1530 AATTT-TGCATTGTGGAGTGTCCACGACTTTAATGCTGCATTCTCCTCTTTGTCTAGGTA 1588 ||||| ||||| ||||||| ||| ||| | || |||| |||||||| || | | | Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1589 CTCTTTATAACTGACTC-CCTCCCCCTGGATTGCAGAGCACGATTGATGGTATCCCACCT 1647 ||| | || || | ||| | | | ||||||| | ||||||||||| || |||||| Sbjct 596217 ATCTCTGTAG--GATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCT 596160 Query 1648 TTAATTTTGAACTGGCTTTTCCGTACTTGCAATT 1681 |||||||| ||| || ||| || ||||||||||| Sbjct 596159 TTAATTTT-AAC-GGGTTTCCCATACTTGCAATT 596128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8454092967896