Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020254.1 Length=2664 Score E Sequences producing significant alignments: (Bits) Value seq1129 118 2e-23 seq519 98.7 2e-17 >seq1129 Length=1508174 Score = 118 bits (130), Expect = 2e-23 Identities = 238/351 (68%), Gaps = 4/351 (1%) Strand=Plus/Minus Query 1554 CATTTTCCTCCTTGTCGAGATACTCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCA 1613 |||||||||| || || || | |||||||| | || || || || ||||| || | | Sbjct 679417 CATTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATA 679358 Query 1614 CGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCGTACTTGCAATTTGACTGCC 1673 ||||||||||| |||||||| || || || ||||||||||| |||| Sbjct 679357 AGATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCC 679298 Query 1674 ACTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAGCTTTAGATAATGGGGTGTGA 1733 | |||||||| | |||||||| || ||| | ||||| | ||||| ||| ||| || | Sbjct 679297 AATCTTTTTG-CCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTA 679239 Query 1734 CATCATCGATGACGTTATACTCAGCATCGTCTGAGTAGACCCGGGAATTGAAATCCA--- 1790 ||||||| ||||| ||||| ||||| | | | || |||||||| | Sbjct 679238 CATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGT 679179 Query 1791 GATGGCCACTTAAGTAATTATGTGGGCCTAATGCTCGAGCCCACATCGTCTTGCCCGTTC 1850 ||||||| | | ||||||||| || | | || || ||| | | || ||||| ||| Sbjct 679178 GATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTC 679119 Query 1851 GAGAGTCACCCTCAACAATTAAACTTATGGGCCTCTCTGGTCGCGCAGCGG 1901 || || |||| |||| |||| | || || ||||| | |||| ||| Sbjct 679118 GACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 98.7 bits (108), Expect = 2e-17 Identities = 146/204 (72%), Gaps = 6/204 (3%) Strand=Plus/Plus Query 1554 CATTTTCCTCCTTGTCGAGATACTCTTTATAACTGGCCCCCTCTCCAGGATTGCAGAGCA 1613 |||||||||| || || || | |||||||| || ||||| | ||| ||| | | Sbjct 1742289 CATTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATA 1742348 Query 1614 CGATTGATGGGATACCTCCTTTAATCTTTCTTGGCTTGCCG-TACTTGCAATTTGACTGC 1672 ||||||||||||| || |||||||| || | || ||| |||||||||| ||| Sbjct 1742349 CGATTGATGGGATGCCACCTTTAAT-TTAAACGAGTTTCCGAAACTTGCAATTACTTTGC 1742407 Query 1673 CACTCTTTTTGAGCACCAATCAATTCCTTCCAGTG----CTTTAGCTTTAGATAATGGGG 1728 || |||||||| | ||||||||||| ||||| || || | ||||| || ||| Sbjct 1742408 CAATCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTGGG 1742467 Query 1729 TGTGACATCATCGATGACGTTATA 1752 | |||||||| ||||| ||||| Sbjct 1742468 AGCTACATCATCAATGACATTATA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8415694362440