Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020255.1 Length=2690 Score E Sequences producing significant alignments: (Bits) Value seq519 136 7e-29 seq1129 134 2e-28 seq1694 120 5e-24 seq2957 86.0 1e-13 >seq519 Length=3254320 Score = 136 bits (150), Expect = 7e-29 Identities = 177/239 (74%), Gaps = 8/239 (3%) Strand=Plus/Plus Query 1543 AGCATTATGGAGCGTCCAGTTTTTTAAACTTGCATTTTCCTCCTTCTGGAGGAAATCTTT 1602 |||||| || ||| |||| || || | | | |||||||||| || | ||||||||||| Sbjct 1742257 AGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTT 1742316 Query 1603 ATAGCTGGCCCCCTCTCCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTG 1662 |||| || ||||| | | ||| ||| | |||||||||||||| || |||||||||| Sbjct 1742317 ATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTA 1742376 Query 1663 AACTGGCTTTCCG-TATTTACAATTTGACTGCCAATCCTTTTGGGACCCAATGAGTTCTT 1721 ||| | |||||| | || ||||| |||||||| ||||| |||||| | ||||| Sbjct 1742377 AAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTT 1742435 Query 1722 TCCAGTG----CTTTAGCTTTAGGTA-GTGCGGGGGGACGTCATCGATGACGTTATATG 1775 |||| || || | ||||| ||| ||| || | || ||||| ||||| ||||||| Sbjct 1742436 TCCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATATG 1742493 Score = 82.4 bits (90), Expect = 1e-12 Identities = 105/138 (76%), Gaps = 5/138 (4%) Strand=Plus/Plus Query 1316 TGTTATCTTGAAATAGAGGGGATTTGTTATCTCCCATATATAGACGCCATTCTCTGC-CT 1374 |||||||||||||||||||| ||||| || ||||| ||| || ||||| | ||| || Sbjct 1741954 TGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACACCATTGT-TGCACT 1742012 Query 1375 GAGGCGCAGTGATGTATTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTTGATGTGGACG 1434 || || ||||| | |||||| ||| | ||||||| ||| || ||||| ||||| | Sbjct 1742013 GA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTTAATGTGTTGG 1742071 Query 1435 T-ATATGGAGCAACCACA 1451 | |||| ||||||||| Sbjct 1742072 TAATAT-ATGCAACCACA 1742088 >seq1129 Length=1508174 Score = 134 bits (148), Expect = 2e-28 Identities = 172/233 (74%), Gaps = 3/233 (1%) Strand=Plus/Minus Query 1544 GCATTATGGAGCGTCCAGTTTTTTAAACTTGCATTTTCCTCCTTCTGGAGGAAATCTTTA 1603 ||||| ||||||||| | || || | |||||||||| || | |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1604 TAGCTGGCCCCCTCTCCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1663 |||| || || || |||||||| || | | ||||||||||| ||||||||| || Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1664 ACTGGCTTTCCGTATTTACAATTTGACTGCCAATCCTTTTGGGACCCAATGAGTTCTTTC 1723 || || || || || || ||||| ||||||| ||||| | |||||| | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCAAT-CTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1724 CAGTGCTTTAGCTTTAGGT-AGTGCGGGGGGACGTCATCGATGACGTTATATG 1775 | ||||| | ||||| || |||| || | || ||||| ||||| ||||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATATG 679218 >seq1694 Length=789422 Score = 120 bits (132), Expect = 5e-24 Identities = 168/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 1544 GCATTATGGAGCGTCCAGTTTTTTAAACTTGCATTTTCCTCCTTCTGGAGGAAATCTTTA 1603 ||||| ||||||||||| || || | |||||||||| | | ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1604 TAGCTGGCCCCCTCTCCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGA 1663 ||| || || || |||||||| || | |||||||||| ||| | | |||||||||| Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1664 ACTGGCTTTCCGTATTTACAATTTGACTGCCAATCCTTTTGGGACCCAATGAGTTCTTTC 1723 || | || || || || |||| |||||||| ||||| |||||| | ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1724 CAGTGCTTTAGCTTTAGGT-AGTGCGGGGGGACGTCATCGATGACGTTATATG 1775 | ||||| | ||||| || |||| || | | ||||| ||| | |||| || Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTATCTG 599635 Score = 87.8 bits (96), Expect = 3e-14 Identities = 106/139 (76%), Gaps = 4/139 (3%) Strand=Plus/Minus Query 1316 TGTTATCTTGAAATAGAGGGGATTTGTTATCTCCCATATATAGACGCCATTCTCTGC-CT 1374 |||||||||||||||||| |||||| || ||||| ||| |||||||| | ||| | Sbjct 596573 TGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTGT-TGCACC 596515 Query 1375 GAGGCGCAGTGATGTATTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTTGATGTGGACG 1434 ||| | |||||| | |||||| |||| ||||||| ||| ||||| || || || | Sbjct 596514 GAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAATATGTTGG 596455 Query 1435 T-ATATGGAGCAACCACAA 1452 | |||| | |||||||||| Sbjct 596454 TAATAT-GTGCAACCACAA 596437 Score = 80.6 bits (88), Expect = 5e-12 Identities = 85/112 (76%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 1575 CATTTTCCTCCTTCTGGAGGAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAAAGCA 1634 |||||||||| || | | ||||||| | ||| || || || | | ||||||| | | Sbjct 596239 CATTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATA 596180 Query 1635 CGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTACAATT 1686 ||||||||||||| || |||||||||| ||| || || || || || ||||| Sbjct 596179 CGATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq2957 Length=4215098 Score = 86.0 bits (94), Expect = 1e-13 Identities = 104/138 (75%), Gaps = 3/138 (2%) Strand=Plus/Plus Query 1316 TGTTATCTTGAAATAGAGGGGATTTGTTATCTCCCATATATAGACGCCATTCTCTGC-CT 1374 |||||||||||||||| || |||||| || ||| | |||| || |||| | ||| || Sbjct 1238832 TGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAGGTATATACTTCATTGT-TGCACT 1238890 Query 1375 GAGGCGCAGTGATGTATTCCCCTGTGCGTGAATCCATGGTTGCTGCAGTTGATGTGGACG 1434 ||| |||| ||| || | | | ||||| ||||||| ||| | |||| ||||| | | Sbjct 1238891 GAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATTGTTCATATAGTTAATGTGCAAG 1238950 Query 1435 T-ATATGGAGCAACCACA 1451 | |||||| ||||||||| Sbjct 1238951 TAATATGGTGCAACCACA 1238968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8498891340928