Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020256.1 Length=2649 Score E Sequences producing significant alignments: (Bits) Value seq1129 147 4e-32 seq519 138 2e-29 seq1694 136 7e-29 >seq1129 Length=1508174 Score = 147 bits (162), Expect = 4e-32 Identities = 175/236 (74%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 1506 AATTTAGCATTGTGGAGTGTCCAAGCCTTTAGTGATGCATTTTCCTCTTTGTCGAGGAAA 1565 |||| ||||| ||||| ||| || ||| || | ||||||||||||| || |||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1566 TCTTTATAGCTAGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTA 1625 |||||||||| || || || || ||||| || | | ||||||||||| |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1626 ATTTGAACAGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGT 1685 ||| |||| || || || || |||||||| ||||| |||||||| | ||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTG-CCCCCAATCAAA 679276 Query 1686 TCCTTCCAGTGCTTTAACTTTAGATAATGCGGGGTGACATCATCGATGACGTTGTA 1741 || ||| | ||||| | ||||| ||| || || |||||||| ||||| || || Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTGGGAGTTACATCATCTATGACATTATA 679220 Score = 80.6 bits (88), Expect = 4e-12 Identities = 150/219 (68%), Gaps = 16/219 (7%) Strand=Plus/Minus Query 2280 ATGTCGAAGAATCTGTTATTCGTGCATTGGAATTTCCCTTCGAACTGGAGGAGGACGTGG 2339 |||||||| || || | ||| |||||| |||||||||| ||||||||| || ||||| Sbjct 678630 ATGTCGAAAAACCTTTGATTAGTGCATCAGAATTTCCCTATGAACTGGAGAAGTACGTGC 678571 Query 2340 AGATGAGGCTCCCCATC-----GTCGTGAAGCTCTCTGCAGATTTTGATGAATTTCTTGT 2394 | ||| || ||||| | || | | || | | |||| ||| | ||||| || | | Sbjct 678570 AAATGTGGTTCCCCGGCCCGTTGTTGCGTAGTTTTATGCACATTCTTATGAAGTT-TAGA 678512 Query 2395 TAACTGGTGTTTTTAGGTTGAGGATTTGGGA-----AAGTGCTTCTTCTTTGGTTAAAGA 2449 | | | || ||||||| |||| || ||| || || ||||| | | ||| Sbjct 678511 TTTGTAGGGTA-----GTTGAGGTTTTGAGATGATGAAGAGCATCATCTTTTGAGAGAGA 678457 Query 2450 ACACCGTGGAAATGTGAGGAAATAGTTTTTGGCTTTTAT 2488 ||| | || || ||||||||||||||||| ||||| Sbjct 678456 ACATCTTGAGAAACTGAGGAAATAGTTTTTGCTATTTAT 678418 >seq519 Length=3254320 Score = 138 bits (152), Expect = 2e-29 Identities = 179/242 (74%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 1506 AATTTAGCATTGTGGAGTGTCCAAGCCTTTAGTGATGCATTTTCCTCTTTGTCGAGGAAA 1565 |||| |||||| || || ||||| ||| || | | |||||||||| || || |||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1566 TCTTTATAGCTAGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTA 1625 ||||||||| || ||||| | ||| ||| | |||||||||||||| || |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1626 ATTTGAACAGGCTTTCCG-TATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAG 1684 |||| ||| | |||||| | |||||||| ||||| |||||||| | ||||||| Sbjct 1742372 ATTTAAAC-GAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1685 TTCCTTCCAGTG----CTTTAACTTTAGATAATGCGGG-GTGACATCATCGATGACGTTG 1739 ||| ||||| || || | ||||| | ||| ||| | |||||||| ||||| || Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTA-AGTATGTGGGAGCTACATCATCAATGACATTA 1742489 Query 1740 TA 1741 || Sbjct 1742490 TA 1742491 >seq1694 Length=789422 Score = 136 bits (150), Expect = 7e-29 Identities = 169/229 (74%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 1506 AATTTAGCATTGTGGAGTGTCCAAGCCTTTAGTGATGCATTTTCCTCTTTGTCGAGGAAA 1565 |||| ||||| ||||| |||||| ||| || | |||||||||||| || ||||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1566 TCTTTATAGCTAGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTTA 1625 ||||||||| || || || || ||||| || | |||||||||| ||| | | |||| Sbjct 599812 TCTTTATAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTA 599753 Query 1626 ATTTGAACAGGCTTTCCGTATTTGCAATTTGACTGCCAGTCTTTTTGAGCACCAATCAGT 1685 ||||||||| | || || || ||||||| ||||| |||||||| | ||||| | | Sbjct 599752 ATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAAT 599693 Query 1686 TCCTTCCAGTGCTTTAACTTTAGATAA-TGCGGGGTGACATCATCGATG 1733 || ||| | ||||| | ||||| ||| || | | || ||||||| ||| Sbjct 599692 TCTTTCTATTGCTTCATCTTTAAGTAAGTGGGAGCTG-CATCATCAATG 599645 Score = 105 bits (116), Expect = 1e-19 Identities = 114/150 (76%), Gaps = 1/150 (1%) Strand=Plus/Minus Query 1506 AATTTA-GCATTGTGGAGTGTCCAAGCCTTTAGTGATGCATTTTCCTCTTTGTCGAGGAA 1564 |||||| |||| ||||||| |||| ||| || | ||||||||||||| || | ||| Sbjct 596277 AATTTATGCATATTGGAGTGCCCAATTCTTCAGGGCCACATTTTCCTCTTTATCCATGAA 596218 Query 1565 ATCTTTATAGCTAGCCCCCTCTCCAGGATTGCAGAGCACGATTGATGGGATACCCCCTTT 1624 |||| | ||| || || || | ||||||| | |||||||||||||| || ||||| Sbjct 596217 ATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACGATTGATGGGATGCCACCTTT 596158 Query 1625 AATTTGAACAGGCTTTCCGTATTTGCAATT 1654 ||||| ||| || || || || |||||||| Sbjct 596157 AATTTTAACGGGTTTCCCATACTTGCAATT 596128 Score = 89.7 bits (98), Expect = 9e-15 Identities = 142/203 (70%), Gaps = 8/203 (4%) Strand=Plus/Minus Query 2280 ATGTCGAAGAATCTGTTATTCGTGCATTGGAATTTCCCTTCGAACTGGAGGAGGACGTGG 2339 |||||||| || | | ||| ||||||| |||||||||| ||||||||| || ||||| Sbjct 588251 ATGTCGAAAAACATTTGATTGGTGCATTAGAATTTCCCTATGAACTGGAGAAGTACGTGC 588192 Query 2340 AGATGAGGCTCCCCATCGTCGTGAAGCTCTCTGCAGATTTTGATGAATTTC----TTGTT 2395 | ||| || ||||| | ||| || |||||||| | | |||||||| |||| Sbjct 588191 AAATGTGGTTCCCCGGTGCTGTGCAGTTCTCTGCACACACTTATGAATTTGAAATTTGTA 588132 Query 2396 AACTGGTGTTTTTAGGTTGAGGATTTGGGAAAGTGCTTCTTCTTTGGTTAAAGAACACCG 2455 | | || | ||||| || || ||| | || ||||| | | |||||| | Sbjct 588131 AGATAGT----TGAGGTTTTTGAGATGATGAAGAACATCATCTTTTGAGAGAGAACATCT 588076 Query 2456 TGGAAATGTGAGGAAATAGTTTT 2478 ||| || |||||||||||||||| Sbjct 588075 TGGGAAAGTGAGGAAATAGTTTT 588053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8367696105620