Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020257.1 Length=2685 Score E Sequences producing significant alignments: (Bits) Value seq1129 127 3e-26 seq519 118 2e-23 seq1694 116 6e-23 >seq1129 Length=1508174 Score = 127 bits (140), Expect = 3e-26 Identities = 241/350 (69%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 1582 TTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGAATTGCAAAGCACG 1641 ||||||||||| || |||||||||||||| | || || || || | ||| || | | | Sbjct 679415 TTTTCCTCTTTATCTAGGAAATCTTTATAGCACGCACCTTCACCTGGATTACACAATAAG 679356 Query 1642 ATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTGCTTTGCCAG 1701 |||| ||| | ||||||||| |||| || || || ||||||||||| |||||||| Sbjct 679355 ATTGATGGGAGGTAACCTTTAATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAA 679296 Query 1702 TCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTTT-AGATAGTGCGGGGCGAC 1760 | | | | | ||||||| || |||||| | ||||| | |||| || |||| || | || Sbjct 679295 T-CTTTTTGCCCCCAATCAAATCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTAC 679238 Query 1761 GTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCTAGAATTGAAATCTA---G 1817 ||||| ||||| ||||| || || || | | || |||||||||| | Sbjct 679237 ATCATCTATGACATTATATGTTGCATCATTGTGGAATACTGATTTGTTGAAATCTAAGTG 679178 Query 1818 GTGTCCGCTCAAGTAATTGTGTGAACCTAAAGCACGGGCCCACATCGTCTTCCCTGTACG 1877 || ||| | | |||||| || | | | |||||| | | || || ||| | || Sbjct 679177 ATGGCCGTTAATGTAATTATGACGGTCGAGTGAGCGGGCCAAAGTAGTTTTGCCTATTCG 679118 Query 1878 ACTATCGCCCTCGACGATGATACTAATAGGTCGCTCAGGCCGCGCAGCGG 1927 ||| ||| || | ||| ||||| |||||| || |||| |||| ||| Sbjct 679117 ACTTGGGCCTTCAATGATTATACTTTTAGGTCTATCTGGCCACGCATCGG 679068 >seq519 Length=3254320 Score = 118 bits (130), Expect = 2e-23 Identities = 149/202 (74%), Gaps = 6/202 (3%) Strand=Plus/Plus Query 1582 TTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGAATTGCAAAGCACG 1641 |||||||| || || |||||||||||||| || ||||| | || ||| | ||| Sbjct 1742291 TTTTCCTCATTATCTAGGAAATCTTTATAGGATGCACCCTCACTTAGATAGCACAATACG 1742350 Query 1642 ATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTGCTTTGCCAG 1701 |||| ||| || || |||||||||| ||| | || | |||||||||| |||||||| Sbjct 1742351 ATTGATGGGATGCCACCTTTAATTTAAACGAGTTTCCGAAACTTGCAATTACTTTGCCAA 1742410 Query 1702 TCCCTCTGGGCCCCAATTAATTCTTTCCAGTG----CTTTAGCTTTAGATA-GTGCGGGG 1756 || | || ||||||| ||||||||||| || || | ||||| || ||| || | Sbjct 1742411 TCTTTTTGCACCCCAATCAATTCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAG 1742469 Query 1757 CGACGTCATCAATGACGTTATA 1778 | || ||||||||||| ||||| Sbjct 1742470 CTACATCATCAATGACATTATA 1742491 Score = 82.4 bits (90), Expect = 1e-12 Identities = 196/284 (69%), Gaps = 18/284 (6%) Strand=Plus/Plus Query 1199 GTCGTCCAGA-CTTGGAAGTTGAGAAATGCCTTGTGGAGATCCAACGCTCTCCTCAGGTT 1257 |||||||||| |||| || | | ||||||| || | | | | | |||| || || Sbjct 1741829 GTCGTCCAGATCTTGAAAAAT-ATCTATGCCTTATGAAATTGTAGGGTTTTCCTGAGATT 1741887 Query 1258 GTGGTTGAACCGTATCTGGACGTGGTAGATCCTGTTGTTGGTGT-AGAGTGGATCCTCCA 1316 || |||||| ||||||||| | ||| || |||| ||| | | || ||||| Sbjct 1741888 GTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAATTGTCTCCTCTG 1741947 Query 1317 CTCTGGT--TATCTTGAAATACAGGGGATTTGTTATCTCCCA--GATATACACGCCACTC 1372 | | || |||||||||||| |||| ||||| || ||||| |||||||| ||| | Sbjct 1741948 GTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATATACA--CCATTG 1742005 Query 1373 TCTGC-TTGAGGCGCAGTGATGAGTTCCCCTGTGCGTGAATCCATTGTTGCGGCAGTTTA 1431 | ||| ||| || ||||| ||||||| ||| | ||||||| ||| | ||||| | Sbjct 1742006 T-TGCACTGA-GCCTAGTGAGATGTTCCCCGGTGTGAAAATCCATCGTTCCTACAGTTAA 1742063 Query 1432 TG---TGGACATATACTGAGCACCCACAGTGTAGGTCAATGCGC 1472 || ||| ||||| ||| ||||||| || ||||||||| Sbjct 1742064 TGTGTTGGTAATATA---TGCAACCACAGTATATATCAATGCGC 1742104 >seq1694 Length=789422 Score = 116 bits (128), Expect = 6e-23 Identities = 182/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 1582 TTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGAATTGCAAAGCACG 1641 |||||||||| || ||||||||||||| || || || || | ||| || | ||| Sbjct 599833 TTTTCCTCTTCATCCGGGAAATCTTTATAGGACGCACCTTCACCTGGATTACACAATACG 599774 Query 1642 ATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTGCTTTGCCAG 1701 |||| || || | | |||||||||||| | || || |||||||||| |||||||| Sbjct 599773 ATTGATGAGATGACACATTTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAA 599714 Query 1702 TCCCTCTGGGCCCCAATTAATTCTTTCCAGTGCTTTAGCTTT-AGATAGTGCGGGGCGAC 1760 || | || ||||||| ||||||||| | ||||| | |||| || |||| || || | Sbjct 599713 TCTTTTTGCACCCCAATAAATTCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGC 599655 Query 1761 GTCATCAATGACGTTATACTCCGCCTCGTTCGAGTAAACCCTAGAATTGAAATCTAGGTG 1820 ||||||||| | |||| || || ||| || | || |||||||| ||| Sbjct 599654 ATCATCAATGTCATTATCTGGTGCATCATTCTAGAATACTGATTTGTTGAAATCATAGTG 599595 Query 1821 TCCGCTCAAGTAATTGTG 1838 ||||| | |||||| || Sbjct 599594 ACCGCTTATGTAATTATG 599577 Score = 84.2 bits (92), Expect = 4e-13 Identities = 90/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 1582 TTTTCCTCTTTGTCGAGGAAATCTTTATAACTGGCCCCCTCTCCAGAATTGCAAAGCACG 1641 ||||||||||| || | ||||||| | || || || || | |||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1642 ATTGCTGGTATACCTCCTTTAATTTGAACTGGCTTACCGTACTTGCAATTGCTTTGCCA 1700 |||| ||| || || |||||||||| ||| || || || ||||||||||| |||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATTACTTTGCCA 596119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8482891921988