Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_020473.1 Length=2743 Score E Sequences producing significant alignments: (Bits) Value seq519 132 8e-28 seq1694 77.0 6e-11 >seq519 Length=3254320 Score = 132 bits (146), Expect = 8e-28 Identities = 257/369 (70%), Gaps = 8/369 (2%) Strand=Plus/Plus Query 2199 TGCTGGCCTCCTCTTGCAGATCTGCCGTCGATTTGGAACTCTCCCCACTCAAGTGTGTCT 2258 |||| | ||| || |||||||| || || ||||| || || | || || | |||| Sbjct 1743133 TGCTTACATCCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCT 1743192 Query 2259 CCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGA 2318 || ||||| ||||| || || || || | ||| | ||||||| |||| || || Sbjct 1743193 CCCTCCTTTTCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGA 1743252 Query 2319 TGGAAATGTGCTGACCTGGTTGGG-GATACCAGGTCGAAGAATCACTGATTCTTGCACTG 2377 ||||| || | ||| | ||| |||| | ||| || ||||| ||||| |||| Sbjct 1743253 TGGAATTGAATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACA 1743311 Query 2378 GTATTTGCCCTCGAACTGGATGAGCACGTGTAAATGAGGTTCCCCATTTTCGTGTAGCTC 2437 | |||| || ||| ||||| || || || ||||| |||||||| || |||||| || Sbjct 1743312 GAATTTACCTGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTC 1743371 Query 2438 TCTGCAGA-TCTTGATGAATTTTTTATTAGTTGGTGTCTGTAGGTTTTGTAATTGGGAAA 2496 | |||| | |||| ||||||||| ||| || || | ||| ||| | || || Sbjct 1743372 TTTGCACACTCTT-ATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAA 1743430 Query 2497 GTGCCTCTTCTTTTGTGAGAGAGCA-CTTGGGATAAGTTAGAAAATAATTCTTTGC-GTT 2554 | || || ||||||||||| || || ||||||| |||| || |||| ||| ||||| || Sbjct 1743431 GAGCATCATCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATT-TTTGCTATT 1743488 Query 2555 TATTTTAAA 2563 |||| |||| Sbjct 1743489 TATTCTAAA 1743497 Score = 118 bits (130), Expect = 2e-23 Identities = 273/400 (68%), Gaps = 10/400 (3%) Strand=Plus/Plus Query 2207 TCCTCTTGCAGATCTGCCGTCGATTTGGAACTCTCCCCACTCAAGTGTGTCTCCGTCCTT 2266 ||| || ||||||| || || ||||| || || |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2267 GTCGATATAGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAA 2324 || || || || || || || || | |||||||| |||| || |||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2325 TGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCACTGATTCTTGCACTGGTATTTG 2384 || | || || ||| | | |||||| || || ||||| |||| | |||| Sbjct 1749076 TGAATGGTTCTA-TTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2385 CCCTCGAACTGGATGAGCACGTGTAAATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAG 2444 || ||||| || || || || ||||| ||||||| | | |||||| |||||||| Sbjct 1749135 CCTGTGAACTAGA-GATTACATGCAAATGTGGTTCCCGTTGCT-GTGTAGTTCTCTGCAC 1749192 Query 2445 ATCTTGATGAATTTTTTATTAGTTGGTGTCTGTAGGTTTTGTAATTGGGAAAGTGCCTCT 2504 | || |||||||| ||| || || | ||||||| | || ||| | || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGGGTAGTTGAGGTTTTTGAGATGACGAAGAACATCA 1749252 Query 2505 TCTTTTGTGAGAGAGCA-CTTGGGATAAGTTAGAAAATAATTCTTTGC-GTTTATTTTAA 2562 ||||||||||| | || ||||||| |||| ||||||||||| ||||| |||||| ||| Sbjct 1749253 TCTTTTGTGAGTAAACATCTTGGGA-AAGTGAGAAAATAATT-TTTGCTATTTATTCTAA 1749310 Query 2563 ATAGGCTCTTTGGAGGCA-TGGTCAATGGACACCGATTGA 2601 | | | | || |||| || | |||| | ||||||||| Sbjct 1749311 ACATGTTATTGGGAGCCATTTTTCAAATGTTACCGATTGA 1749350 >seq1694 Length=789422 Score = 77.0 bits (84), Expect = 6e-11 Identities = 228/345 (66%), Gaps = 20/345 (6%) Strand=Plus/Minus Query 2211 CTTGCAGATCTGCCGTCGATTTGGAACTCTCCCCACTCAAGTGTGTCTCCGTCCTTGTCG 2270 || |||||||| || |||||||| || || ||||| || | |||||| ||||| || Sbjct 599257 CTAGCAGATCTTCCATCGATTTGAAAATCACCCCAATCTACGTAGTCTCCCTCCTTTTCA 599198 Query 2271 ATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCT 2330 || || || || || | ||| ||||| | ||||| | |||||||| || Sbjct 599197 ATGTATGATTTAACATTAGAGGCTGATTTTGTAGACTGAACACTTGGATGGAATTGAATA 599138 Query 2331 GACCTGGTTGGGGATACCAGGTCGAAGAATCACTGATTCTTGCACTGGTATTTGCCCTCG 2390 | ||| | ||| | | |||||| || | |||| | || | |||| || | Sbjct 599137 GTTCTGTTAGGGTGTGGTATGTCGAA-AACCTTTGATAGGTTCAACAGAATTTTCCTGTG 599079 Query 2391 AACTGGATGAGCACGTGTAAATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAGA-TCTT 2449 || | || || ||||||||||| |||||||| || || || |||| ||| | |||| Sbjct 599078 AATTAGAGAAGTACGTGTAAATGTGGTTCCCCGTTGCGGTCTAATTCTCAGCACACTCTT 599019 Query 2450 GATGAATTT----TTTAT----TAGTTGGTGTCTGTAGGTTTTGTAATTGGGAAAGTGCC 2501 |||||||| ||||| ||||||| || |||| || || ||| | Sbjct 599018 -ATGAATTTGAGATTTATAGCGTAGTTGGGGT-------TTTTTGAAATGATGAAGAACA 598967 Query 2502 TCTTCTTTTGTGAGAGAGCA-CTTGGGATAAGTTAGAAAATAATT 2545 || |||||| ||||||||| ||||| | |||| | ||||| || Sbjct 598966 TCATCTTTTAAGAGAGAGCATCTTGGTA-AAGTGTGGAAATAGTT 598923 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8668485181692