Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021202.1 Length=2739 Score E Sequences producing significant alignments: (Bits) Value seq3069 143 5e-31 seq1694 116 6e-23 seq2957 114 2e-22 seq519 113 8e-22 seq1129 80.6 5e-12 >seq3069 Length=10854949 Score = 143 bits (158), Expect = 5e-31 Identities = 262/384 (68%), Gaps = 0/384 (0%) Strand=Plus/Plus Query 1150 ATTACATTATTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTA 1209 || |||||||| | |||||| || || | | ||||||||||| || |||| | Sbjct 3754264 ATAACATTATTTAAACTAATGACTCCAATACATTCTAAATATTTATTAACATGAAAAGCA 3754323 Query 1210 AATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATCAGA 1269 | | | | ||| | ||||| |||| ||| |||||||||| ||| | | Sbjct 3754324 AGTCGTTCTCTGAATTGAGAAGTCGAAGGTGTTAATGTCGTCCAGATCTTGAAAAATATC 3754383 Query 1270 AAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTT 1329 | || || | | ||| |||||||| |||||| |||||||||||| |||||| | Sbjct 3754384 CATGCCTTCTGAAATTTCAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCT 3754443 Query 1330 ATGATGTCGTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGG 1389 ||||||||||||| | |||| ||||||||| ||||| |||| ||||||||||||| Sbjct 3754444 ATGATGTCGTGGTCGTTGTTAAATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGG 3754503 Query 1390 GGATTTTTGATTGTCCAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCC 1449 |||||| | | || |||| ||| || | | ||| | || | |||||| || | Sbjct 3754504 GGATTTGGTACTTCTCAAATATATACGTCATTGTTGCACTAAGCCGTAGTGAGATTTTTC 3754563 Query 1450 CCTGTGCGAAAATCCATGATTTGCACAATCTATGCCGAAGTAGTATGAGCACCCGCACGT 1509 || |||||||||| ||| || |||| ||| | |||||||| ||| || || Sbjct 3754564 CCAGTGCGAAAATACATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACATTA 3754623 Query 1510 TAGATCAACTCTCCGTCTCCGAAT 1533 || || ||| | | ||||| ||| Sbjct 3754624 TATATAAACACGCTTTCTCCTAAT 3754647 >seq1694 Length=789422 Score = 116 bits (128), Expect = 6e-23 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 1303 TTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAATGGTCTCTCG 1362 |||| |||||| |||||||||||| ||| |||||||||||| ||||||||||| || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1363 TGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTATACACGCCACTC 1422 | ||| |||||||||||||| || ||||| | | ||| | ||| |||||| | Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1423 TCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1466 | ||| ||| ||||||| |||||| |||| ||||||||| Sbjct 596521 TTGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT 596478 Score = 100 bits (110), Expect = 5e-18 Identities = 85/105 (81%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 1291 GCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTG 1350 |||||||| | || || |||||| | ||| | |||| |||||||||| ||||| ||||| Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1351 AATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTT 1395 ||||||||| ||||| |||||||||||||| ||||||||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTT 600128 >seq2957 Length=4215098 Score = 114 bits (126), Expect = 2e-22 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 1288 AACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTG 1347 || |||||| | ||||||| |||||| ||||| ||||| |||||||| | | ||| || Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGATGTCTATGATGTTGAGTTTGTTG 1238808 Query 1348 TTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATTGTCCAG 1407 ||||||| |||| ||||| |||||||||||||| || ||||| | | | || Sbjct 1238809 TTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTAG 1238868 Query 1408 GTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATG 1467 ||||| || || | | ||| |||| ||| |||| | | | |||||||||||||| Sbjct 1238869 GTATATACTTCATTGTTGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCATT 1238928 Query 1468 ATTTGCACAATCTATGCCGAAGTAGTAT-GAGCACCCGCACGTTAGATCA 1516 || | | | ||| ||||| ||| | ||| || ||| |||||||| Sbjct 1238929 GTTCATATAGTTAATGTGCAAGTAATATGGTGCAACCACACTTTAGATCA 1238978 >seq519 Length=3254320 Score = 113 bits (124), Expect = 8e-22 Identities = 130/174 (75%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1293 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1352 |||||| || |||| |||||| ||||| ||||| |||||||||||||||| |||| || Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTAAA 1741935 Query 1353 TGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATTGTCCAGGTATA 1412 | ||||| |||| |||||||||||||| |||| |||| | | ||| | ||| Sbjct 1741936 TTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGATA 1741995 Query 1413 CACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCAT 1466 || ||| | | ||| |||| |||||| |||||| ||| |||||||||| Sbjct 1741996 TACACCATTGTTGCACTGAG-CCTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 91.5 bits (100), Expect = 3e-15 Identities = 233/352 (66%), Gaps = 2/352 (1%) Strand=Plus/Plus Query 2229 CCTCTTGCAGAGCGTCCGTCGATCTGAAATTCTCCCCATTCGAGGGTGTCTCCGTCCTTC 2288 || || ||||| | ||| || || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2289 TCCAGGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGT 2348 || | ||| || || || | ||| | ||||||| |||| || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2349 GCTGACCTGGTTGGG-GAGACCAGGTCGAAGAATCTGTTATTTTGGCATTTGTATTTGCC 2407 | ||| | ||| || | | ||| || |||| | ||| ||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2408 TTCGAATTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCATGAAGTTCGCTGCAGat 2467 | ||| |||||||| || || | ||| || ||| | || ||||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2468 tttgatgtattttttatttgttggggtgtttaggttttttatttgGGAAAGTGCCTCTTC 2527 | | ||| ||||| |||||| ||| ||| ||| |||| | || ||| || || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2528 TTTAGTAAGAGAGCATTGTGGATAAGTGAGGAAAAAGTTTTTGGCATATATT 2579 ||| || || || ||| ||| ||||||||||| |||||| || |||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATT 1743492 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1293 TTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAA 1352 |||| | | ||||| |||||| |||||||||||| |||||||||||| ||| ||||||| Sbjct 679757 TTTCATAAAGTTGTAGTTGAACTGTATTTGGATCTCTATGATGTCGTGATTGTTGTTGAA 679698 Query 1353 TGGTCTC 1359 ||||||| Sbjct 679697 TGGTCTC 679691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8655685646540