Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021245.1 Length=2742 Score E Sequences producing significant alignments: (Bits) Value seq1129 104 4e-19 seq1694 102 1e-18 seq519 102 1e-18 seq3069 96.9 6e-17 seq2957 87.8 3e-14 >seq1129 Length=1508174 Score = 104 bits (114), Expect = 4e-19 Identities = 129/174 (74%), Gaps = 2/174 (1%) Strand=Plus/Minus Query 1294 TTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTGTTATGATGTCGTGGTTTATTAGGAA 1353 |||||| | |||||||||||||||||| |||| |||||||| |||| | | ||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1354 CGGTCTCTCGAGGTGTTGGGTTATCTTGAAATAGAGGGGATTTTTGATTGTCCAGGTATA 1413 ||||||| ||||||| ||||||||| ||||| ||||| ||| | | ||| ||||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATAG-GGGGAATTTAAACTTCCCAAGTATA 693657 Query 1414 AACGCCATTCTCTGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCAT 1467 |||||||| | | | || ||| ||| || | ||| || ||| ||||||| Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCAT 693604 >seq1694 Length=789422 Score = 102 bits (112), Expect = 1e-18 Identities = 137/183 (75%), Gaps = 6/183 (3%) Strand=Plus/Minus Query 1304 TTGTAGTTGAACTGTATTTGGACTGTTATGATGTCGTGGTTTATTAGGAACGGTCTC-TC 1362 |||||||||||||||||||||| ||| ||||||||||| | ||| ||| || || Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1363 GAGGTGTTGGGTTATCTTGAAATAGAGGGGATTTTTGATTGTCCAGGTATAAACGCCATT 1422 || ||| | ||||||||||||||||| ||||| | | ||| | ||| |||||||| Sbjct 596581 TAG-TGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATT 596523 Query 1423 CTCTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCATGTGATGC-GCAATT 1480 | ||| |||| |||||| ||||||| |||| | ||||||| | | | |||||| Sbjct 596522 GT-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCAT-CGTTCCTGCAATT 596465 Query 1481 AAT 1483 ||| Sbjct 596464 AAT 596462 Score = 84.2 bits (92), Expect = 4e-13 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 1292 GCTTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTGTTATGATGTCGTGGTTTATTAGG 1351 |||||||| | || ||||||||||| ||| | || |||||||||| |||| | | Sbjct 600232 GCTTTCCTGATGTCGTAGTTGAACTATATCTAGATCTCTATGATGTCGAGGTTGTTGTTG 600173 Query 1352 AACGGTCTCTCGAGGTGTTGGGTTATCTTGAAATAGAGGGGATTTTTGATTGTCCAGGTA 1411 || |||||| ||||| |||||||||||||||||||||||| | | || ||| Sbjct 600172 AATGGTCTCCTCTGGTGTCATGTTATCTTGAAATAGAGGGGATTTGGTACTTCTCAAGTA 600113 Query 1412 TAAACGCCATT 1422 || ||| |||| Sbjct 600112 TATACGTCATT 600102 >seq519 Length=3254320 Score = 102 bits (112), Expect = 1e-18 Identities = 268/401 (67%), Gaps = 6/401 (1%) Strand=Plus/Plus Query 2188 TTAAGCGCTTTGGCGTAAGCATCATTGGCTGATTGTTGCCCTCCTCTAGCACTTCTTCCA 2247 |||| |||||| | ||| |||| || ||| | | ||| |||||| ||||||| Sbjct 1743100 TTAATCGCTTTAGTGTATACATCTACAACTATTTGCTTACATCCCCTAGCAGATCTTCCA 1743159 Query 2248 TCGATCTGGAACTCTCCCCATTCCAGTGTGTCTCCGTCCTTGTTGATATAGGACTTGACG 2307 || || || || || | || || | |||||| ||||| | ||| || || || || Sbjct 1743160 TCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTTTCGATGTATGATTTAACA 1743219 Query 2308 TCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTTGG-GA 2366 | ||| | ||||||| |||| ||| ||||||| || | ||| | || || Sbjct 1743220 TTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAATGGTTCTGTTAGGGTGA 1743279 Query 2367 TACCAGGTCGAAGAATCTGTTATTCTTGCACTGGAACTTGCCCTCGAACTGGATGAGCAC 2426 || | ||| || |||| | ||| |||| ||| || || ||| ||||| || || Sbjct 1743280 TAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCTGTGAAGTGGATAAGTAC 1743338 Query 2427 GTGGAGATGAGGGTTCCCATTTTGGTGAAACTCTCTACAGA-TCTTGATATATTTTTTAT 2485 || | ||| || | ||| || ||| | ||| | || | |||| || ||||| || Sbjct 1743339 ATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACTCTT-ATGAATTTTAGAT 1743397 Query 2486 TTGTTGGTGTAGTT-AGGTTTTGTAGTTGGGAAAGTGCTTCGTCTTTAGTAAGAGAGCAA 2544 |||| || |||||| ||| ||| || || ||| || || ||||| || || || || Sbjct 1743398 TTGTAGG-GTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATCTTTTGTGAGGGAACAT 1743456 Query 2545 TCTGGATAAGTGAGGAAAAAATTTTTGGCATTTATTCGAAA 2585 ||| ||||||||||| ||||||| |||||||| ||| Sbjct 1743457 CTTGGGAAAGTGAGGAAATGATTTTTGCTATTTATTCTAAA 1743497 Score = 100 bits (110), Expect = 5e-18 Identities = 132/177 (75%), Gaps = 7/177 (4%) Strand=Plus/Plus Query 1294 TTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTGTTATGATGTCGTGGT--TTATTAGG 1351 |||||| || ||||||||||| ||||| |||| | |||||||||||||| || ||| Sbjct 1741876 TTTCCTGAGATTGTAGTTGAAATGTATCTGGATTTCTATGATGTCGTGGTTGTTGTTA-- 1741933 Query 1352 AACGGTCTCTCGAGGTGTTGGGTTATCTTGAAATAGAGGGGATTTTTGATTGTCCAGGTA 1411 || ||||| ||| | | ||||||||||||||||||| |||| | | ||| | | Sbjct 1741934 AATTGTCTCCTCTGGTTTCGTGTTATCTTGAAATAGAGGGAATTTGGTAATTCCCAAGGA 1741993 Query 1412 TAAACGCCATTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCAT 1467 || || ||||| | ||| ||||| ||||| ||||||| ||| || ||||||| Sbjct 1741994 TATACACCATTGT-TGCACTGAGC-CTAGTGAGATGTTCCCCGGTGTGAAAATCCAT 1742048 Score = 84.2 bits (92), Expect = 4e-13 Identities = 239/360 (66%), Gaps = 7/360 (2%) Strand=Plus/Plus Query 2229 TCCTCTAGCACTTCTTCCATCGATCTGGAACTCTCCCCATTCCAGTGTGTCTCCGTCCTT 2288 ||| ||| || ||||||||| || || || || |||| || | |||||| ||||| Sbjct 1748956 TCCCCTAACAGATCTTCCATCAATTTGAAAATCATCCCAATCTACATAGTCTCCCTCCTT 1749015 Query 2289 GTTGATATAGGACTTGACG--TCGGAGCTGGATTTAGCTCCCTGAATGTTTGGATGGAAA 2346 | || || || || || || || | |||||||| |||| ||||||||||| Sbjct 1749016 TTCAATGTATGATTTAACCCATCAAAGGTTGATTTAGCATATTGAACATTTGGATGGAAT 1749075 Query 2347 TGTGCTGACCTGGTTTGGGATACCAGGTCGAAGAATCTGTTATTCTTGCACTGGAACTTG 2406 || | || || ||| | | |||||| || | | ||| |||| ||| || Sbjct 1749076 TGAATGGTTCT-ATTAGGGTTTGTATGTCGAAAAACCATTGATTGGTGCAGCAGAATTTC 1749134 Query 2407 CCCTCGAACTGGATGAGCACGTGGAGATGAGGGTTCCCATTTTGGTGAAACTCTCTACAG 2466 || ||||| || || || || | ||| ||||||| || ||| | ||||| || Sbjct 1749135 CCTGTGAACTAGA-GATTACATGCAAATG-TGGTTCCCGTTGCTGTGTAGTTCTCTGCAC 1749192 Query 2467 ATCTTGATATATTTTTTATTTGTTGGTGTAGTT-AGGTTTTGTAGTTGGGAAAGTGCTTC 2525 | || || |||| |||||| || |||||| ||||||| || || ||| | || Sbjct 1749193 ACTTTTATGAATTTAAGATTTGTAGG-GTAGTTGAGGTTTTTGAGATGACGAAGAACATC 1749251 Query 2526 GTCTTTAGTAAGAGAGCAATCTGGATAAGTGAGGAAAAAATTTTTGGCATTTATTCGAAA 2585 ||||| || || | || ||| ||||||| ||| |||||||| |||||||| ||| Sbjct 1749252 ATCTTTTGTGAGTAAACATCTTGGGAAAGTGAGAAAATAATTTTTGCTATTTATTCTAAA 1749311 >seq3069 Length=10854949 Score = 96.9 bits (106), Expect = 6e-17 Identities = 160/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 1288 CAACGCTTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTGTTATGATGTCGTGGT--TT 1345 ||| |||||||| |||||| ||||||| ||||| |||| |||||||||||||| || Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1346 ATTAGGAACGGTCTCTCGAGGTGTTGGGTTATCTTGAAATAGAGGGGATTTTTGATTGTC 1405 ||| || |||||| ||||| |||| ||||||||| ||||||||| | | Sbjct 3754461 GTTA--AATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCT 3754518 Query 1406 CAGGTATAAACGCCATTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATC 1464 || |||| ||| |||| | ||| | ||| | ||||| || ||| |||||| ||| Sbjct 3754519 CAAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATA 3754577 Query 1465 CATGTGAT-GCGCAATTAATCCCAAAATAGTAAGAGCAACCGCA 1507 ||| || | ||||||||| | ||||| | |||||| || Sbjct 3754578 CAT-TGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCACA 3754620 >seq2957 Length=4215098 Score = 87.8 bits (96), Expect = 3e-14 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 1289 AACGCTTTCCTCAGGTTGTAGTTGAACTGTATTTGGACTGT-TATGATGTCGTGGTTTAT 1347 || |||||| | ||||||| |||||||||||| |||| ||| |||||||| | | || | Sbjct 1238749 AAGGCTTTCTTGAGGTTGTCGTTGAACTGTATCTGGA-TGTCTATGATGTTGAGTTTGTT 1238807 Query 1348 TAGGAACGGTCTCTCGAGGTGTTGGGTTATCTTGAAATAGAGGGGATTTTTGATTGTCCA 1407 ||| | |||| ||||| ||||||||||||||| || ||||| | | | | Sbjct 1238808 GTTGAATGATCTCCTTTGGTGTCATGTTATCTTGAAATAGCGGAGATTTGGTACTTCCTA 1238867 Query 1408 GGTATAAACGCCATTCTCTGC-TTGAGCTGCAGTGATGAGTTCCCCTGTGCGAGAATCCA 1466 |||||| || |||| | ||| ||||| ||| ||| | | | | |||||| |||||| Sbjct 1238868 GGTATATACTTCATTGT-TGCACTGAGCCGCAATGAGGTTTCCATCAGTGCGAAAATCCA 1238926 Query 1467 T 1467 | Sbjct 1238927 T 1238927 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8665285297904