Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021341.1 Length=2754 Score E Sequences producing significant alignments: (Bits) Value seq519 98.7 2e-17 seq3069 82.4 1e-12 seq1694 82.4 1e-12 seq1129 80.6 5e-12 >seq519 Length=3254320 Score = 98.7 bits (108), Expect = 2e-17 Identities = 229/343 (67%), Gaps = 2/343 (1%) Strand=Plus/Plus Query 2231 CCTCTTGCAGATCTTGCATCGATCTGAAACTCTCCCCATTCGATGGTGTCTCCGTCCTTC 2290 || || ||||||||| |||| || ||||| || | || || | | |||||| ||||| Sbjct 1743142 CCCCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTACGTAGTCTCCCTCCTTT 1743201 Query 2291 TCCAGATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGT 2350 || | || || || || | ||| | ||||||| || | || ||||||| || Sbjct 1743202 TCGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGA 1743261 Query 2351 GCTGACCTGGTTGGG-GATACCAAATCGAAGAATCTGTTATTTTGGCACTTGTATTTTCC 2409 | ||| | ||| |||| | || || |||| | ||| ||| | |||| || Sbjct 1743262 ATGGTTCTGTTAGGGTGATAT-ATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACC 1743320 Query 2410 TTCGAATTGGATAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAGAt 2469 | ||| |||||||| || || | ||| || ||| | ||| || ||| |||| | Sbjct 1743321 TGTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACAC 1743380 Query 2470 ttttatgtattttttatttgtaggggtttgtaggttttgtaATTGGGAAAGTGCTTCTTC 2529 | ||||| ||||| |||||||||| | ||| ||| | || ||| || || || Sbjct 1743381 TCTTATGAATTTTAGATTTGTAGGGTAGTTGAGGCTTTTGAGATGATGAAGAGCATCATC 1743440 Query 2530 TTTTGTAAGTGAGCACTGTGGATAAGTGAGGAAATAATTTTTG 2572 |||||| || || || ||| |||||||||||| ||||||| Sbjct 1743441 TTTTGTGAGGGAACATCTTGGGAAAGTGAGGAAATGATTTTTG 1743483 >seq3069 Length=10854949 Score = 82.4 bits (90), Expect = 1e-12 Identities = 154/222 (69%), Gaps = 6/222 (3%) Strand=Plus/Plus Query 1292 CAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTCGGATCGTGATTATGTCGTGGT--TC 1349 ||| |||||||| |||||| |||||| ||||| ||||| || |||||||||| | Sbjct 3754401 CAAGGCTTTCCTGAGGTTGAAGTTGAATTGTATCTGGATCTCTATGATGTCGTGGTCGTT 3754460 Query 1350 ATTAAGAACGGTCGCTGGTCGTGTTTGATTATTTTGAAATATAGGGGATTTGGAACCATC 1409 |||| | |||| | | |||| ||| |||||||||||||||||||| || Sbjct 3754461 GTTAA--ATGGTCTCCTCTGGTGTCATGTTAACTTGAAATATAGGGGATTTGGTACTTCT 3754518 Query 1410 CAAATATACGCGCCATTCTCTGC-TTGAGTTGCAGTGATGAGTTCCCCGGTGCGAGAATC 1468 |||||||| || |||| | ||| | || | ||||| || ||| |||||| ||| Sbjct 3754519 CAAATATATACGTCATTGT-TGCACTAAGCCGTAGTGAGATTTTTCCCAGTGCGAAAATA 3754577 Query 1469 CATGATTGGCGCAGTTTATTGAGTAATAATATGTGCAGCCAC 1510 ||| || ||| || || | || |||||||| |||| Sbjct 3754578 CATTGTTCTTGCAATTAATGTCTTGGTAGTATGTGCAACCAC 3754619 >seq1694 Length=789422 Score = 82.4 bits (90), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 1308 TTGTGGTTGAACTGTATTCGGATCGTGATTATGTCGTGGTTCATTAAGAACGGTCGCTGG 1367 |||| ||||||||||||| ||||| || ||||||||||| | ||| ||| | Sbjct 596641 TTGTAGTTGAACTGTATTTGGATCTCTATAATGTCGTGGTTGTTGTTGAATGGTGTCCTC 596582 Query 1368 TCGTGTTTGATTATTTTGAAATATAGGGGATTTGGAACCATCCAAATATACGCGCCATTC 1427 | |||| |||| |||||||| || ||||||| || |||| ||| ||||||| Sbjct 596581 TAGTGTCGTGTTATCTTGAAATAGAGTAGATTTGGTACTTCCCAAGCATATACGCCATTG 596522 Query 1428 TCTGCTT-GAGTTGCAGTGATGAGTTCCCCGGTGCGAGAATCCATGATTGGCGCAGTTTA 1486 | ||| ||| |||||| ||||||| |||| | ||||||| || ||| || | Sbjct 596521 T-TGCACCGAGCCACAGTGAGATGTTCCCCAGTGCAAAAATCCATCGTTCCTGCAATTAA 596463 Query 1487 TTGAGTAATAATATGTGCAGCCAC 1510 | | ||||||||||| |||| Sbjct 596462 TATGTTGGTAATATGTGCAACCAC 596439 >seq1129 Length=1508174 Score = 80.6 bits (88), Expect = 5e-12 Identities = 144/208 (69%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 1298 TTTCCTCAGGTTGTGGTTGAACTGTATTCGGATCGTGATTATGTCGTGGTTCATTAAGAA 1357 |||||| | ||||| |||||||||||| ||||| || |||| |||| | | ||| Sbjct 693775 TTTCCTAAAGTTGTAGTTGAACTGTATCTGGATCTCTATGATGTTGTGGATGTTGTTGAA 693716 Query 1358 CGGTCGCTGGTCGTGTTTGATTATTTTGAAATATAGGGGATTTGGAACCATCCAAATATA 1417 ||||| | | ||||| |||| ||| |||| ||||| || ||| |||| |||| Sbjct 693715 CGGTCTCCTCTGGTGTTGTGTTATCTTGTAATA-GGGGGAATTTAAACTTCCCAAGTATA 693657 Query 1418 CGCGCCATTCTCTGCTTGAGTTGCAGTGATGAGTTCCCCGGTGCGAGAATCCATGATTGG 1477 ||||||| | | | ||| ||| ||| || | |||||| ||| ||||||| || Sbjct 693656 TACGCCATTATTTCACTAAGTCGCAATGA-GATATTCCCGGTACGAAAATCCATCGTTCA 693598 Query 1478 CGCAGTTTATTGAGTAATAATATGTGCA 1505 | |||| || | ||||||||||| Sbjct 693597 TGTAGTTAATGTGTTGGTAATATGTGCA 693570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8703683903360