Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_021579.1 Length=2669 Score E Sequences producing significant alignments: (Bits) Value seq1694 159 6e-36 seq1129 159 6e-36 seq519 150 3e-33 >seq1694 Length=789422 Score = 159 bits (176), Expect = 6e-36 Identities = 181/239 (76%), Gaps = 8/239 (3%) Strand=Plus/Minus Query 1505 AATTTTGCATTGTGGAGAGTCCAGTTCTTGAGTGACAGATTCTCCTCTTTGTCGAGGAAC 1564 |||| |||||| ||||| ||||| |||||||| | || ||| ||||||| || |||| Sbjct 599872 AATTATGCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAA 599813 Query 1565 TCTTTATAACTGGAC---CCCTCGCCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCT 1621 |||||||| |||| || || |||||||| || | |||||||| | ||| | | | Sbjct 599812 TCTTTATA---GGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACAT 599756 Query 1622 TTAATTTGAACCGGCTTTCCGTATTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATC 1681 ||||||||||| | || || || ||||||| |||||| || |||| ||||||| Sbjct 599755 TTAATTTGAACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATA 599696 Query 1682 AATTCTTTCCAGTGCTTCATCTTTAGGT-AGTGCGGTGCGACGTCATCAATGACGTTAT 1739 ||||||||| | ||||||||||||| || |||| || || | ||||||||| | |||| Sbjct 599695 AATTCTTTCTATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 >seq1129 Length=1508174 Score = 159 bits (176), Expect = 6e-36 Identities = 180/237 (76%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 1505 AATTTTGCATTGTGGAGAGTCCAGTTCTTGAGTGACAGATTCTCCTCTTTGTCGAGGAAC 1564 |||| |||||| ||||| ||| | |||||||| | | ||| |||||||| || ||||| Sbjct 679454 AATTCTGCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAA 679395 Query 1565 TCTTTATAACTGGACCCCTCGCCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTA 1624 |||||||| | | || || |||||||| || | | |||||| || | | |||||| Sbjct 679394 TCTTTATAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTA 679335 Query 1625 ATTTGAACCGGCTTTCCGTATTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAAT 1684 ||| |||| || || || || |||||||| |||||| || |||| |||||||||| Sbjct 679334 ATTAGAACGGGTTTCCCATACTTGCAATTACTTTGCCAATCTTTTTGC-CCCCAATCAAA 679276 Query 1685 TCTTTCCAGTGCTTCATCTTTAGGT-AGTGCGGTGCGACGTCATCAATGACGTTATA 1740 |||||| | ||||||||||||| || |||| || | || ||||| ||||| ||||| Sbjct 679275 TCTTTCTAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 >seq519 Length=3254320 Score = 150 bits (166), Expect = 3e-33 Identities = 182/242 (75%), Gaps = 8/242 (3%) Strand=Plus/Plus Query 1505 AATTTTGCATTGTGGAGAGTCCAGTTCTTGAGTGACAGATTCTCCTCTTTGTCGAGGAAC 1564 |||| ||||| || || |||| |||||||| | | ||| ||||| || || ||||| Sbjct 1742252 AATTCAGCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAA 1742311 Query 1565 TCTTTATAACTGGACCCCTCGCCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTA 1624 |||||||| | ||||| | | ||| ||| | |||||||| || ||||| |||||| Sbjct 1742312 TCTTTATAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTA 1742371 Query 1625 ATTTGAACCGGCTTTCCGTAT-TTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAA 1683 |||| ||| | |||||| | |||||||| |||||| || |||| |||||||||| Sbjct 1742372 ATTTAAACGAG-TTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAA 1742430 Query 1684 TTCTTTCCAGTG----CTTCATCTTTAGGTA-GTGCGGTGCGACGTCATCAATGACGTTA 1738 ||||||||| || || |||||||| ||| ||| || || || ||||||||||| ||| Sbjct 1742431 TTCTTTCCAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTA 1742489 Query 1739 TA 1740 || Sbjct 1742490 TA 1742491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8431693781380