Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ipomoea_20nil_20[refseq_20GCF_5F001879475.1_202016-09-01] 3,418 sequences; 735,230,855 total letters Query= NC_022005.1 Length=2597 Score E Sequences producing significant alignments: (Bits) Value seq1129 122 1e-24 seq1694 111 3e-21 seq519 109 9e-21 >seq1129 Length=1508174 Score = 122 bits (134), Expect = 1e-24 Identities = 168/231 (73%), Gaps = 3/231 (1%) Strand=Plus/Minus Query 1464 GCATTCTTCAGGGTCCAGTTCCTGATGCCTGTGTTTTCCTCTTTGTTGAGGAAATCTTTA 1523 ||||| | || ||| | ||| ||| | | ||||||||||| | |||||||||||| Sbjct 679448 GCATTTTGGAGCGTCTAATTCTTGAGGGCAACATTTTCCTCTTTATCTAGGAAATCTTTA 679389 Query 1524 TAACTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACA 1583 || | ||||| ||||| ||||| || | | ||||||||||| |||||||| | | Sbjct 679388 TAGCACGCACCTTCACCTGGATTACACAATAAGATTGATGGGAGGTAACCTTTAATTAGA 679329 Query 1584 ACTGGCTTGCCGTACTTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTC 1643 || || || || ||||||||||| ||||| |||||| | ||| || | |||||| Sbjct 679328 ACGGGTTTCCCATACTTGCAATTACTTTGCCA-ATCTTTTTGCCCCCAATCAAATCTTTC 679270 Query 1644 CAGTGCTTTAGCTTT-AGATAGTGCGGTGCGACATCATCAATGACGTTATA 1693 | ||||| | |||| || |||| || | |||||||| ||||| ||||| Sbjct 679269 TAATGCTTCATCTTTAAGTAAGTG-GGAGTTACATCATCTATGACATTATA 679220 >seq1694 Length=789422 Score = 111 bits (122), Expect = 3e-21 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 1464 GCATTCTTCAGGGTCCAGTTCCTGATGCCTGTGTTTTCCTCTTTGTTGAGGAAATCTTTA 1523 ||||| | || ||||| ||| ||| | | |||||||||| | ||||||||||| Sbjct 599866 GCATTTTGGAGCGTCCAATTCTTGAGGGCCACATTTTCCTCTTCATCCGGGAAATCTTTA 599807 Query 1524 TAACTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACA 1583 || ||||| ||||| ||||| || | |||||||||| ||| | | |||||| | Sbjct 599806 TAGGACGCACCTTCACCTGGATTACACAATACGATTGATGAGATGACACATTTAATTTGA 599747 Query 1584 ACTGGCTTGCCGTACTTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTC 1643 || | || || |||||||||| ||||| | ||||| ||| || || ||||||| Sbjct 599746 ACAAGTTTCCCATACTTGCAATAACTTTGCCAATCTTTTTGCACCCCAATAAATTCTTTC 599687 Query 1644 CAGTGCTTTAGCTTTAGATA-GTGCGGTGCGACATCATCAATGACGTTAT 1692 | ||||| | ||||| || ||| || || ||||||||||| | |||| Sbjct 599686 TATTGCTTCATCTTTAAGTAAGTG-GGAGCTGCATCATCAATGTCATTAT 599638 Score = 82.4 bits (90), Expect = 1e-12 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1497 TTTTCCTCTTTGTTGAGGAAATCTTTATAACTGGCACCCTCACCAGGATTGCAAAGCACG 1556 ||||||||||| | | ||||||| | || ||||| |||| ||||||| | ||| Sbjct 596237 TTTTCCTCTTTATCCATGAAATCTCTGTAGGATGCACCTTCACTTAGATTGCACAATACG 596178 Query 1557 ATTGATGGGATCCCTCCTTTAATGACAACTGGCTTGCCGTACTTGCAATT 1606 ||||||||||| || |||||||| ||| || || || ||||||||||| Sbjct 596177 ATTGATGGGATGCCACCTTTAATTTTAACGGGTTTCCCATACTTGCAATT 596128 >seq519 Length=3254320 Score = 109 bits (120), Expect = 9e-21 Identities = 167/235 (71%), Gaps = 6/235 (3%) Strand=Plus/Plus Query 1464 GCATTCTTCAGGGTCCAGTTCCTGATGCCTGTGTTTTCCTCTTTGTTGAGGAAATCTTTA 1523 ||||| | || |||| ||| ||| || |||||||| || | |||||||||||| Sbjct 1742258 GCATTTTGTAGCATCCAATTCTTGAGAGCTACATTTTCCTCATTATCTAGGAAATCTTTA 1742317 Query 1524 TAACTGGCACCCTCACCAGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATGACA 1583 || |||||||||| ||| ||| | |||||||||||||| || |||||||| | Sbjct 1742318 TAGGATGCACCCTCACTTAGATAGCACAATACGATTGATGGGATGCCACCTTTAATTTAA 1742377 Query 1584 ACTGGCTTGCCGTACTTGCAATTTGACTGCCATTTCTTTTGGGCCCAAAAAAGTTCTTTC 1643 || | || | |||||||||| ||||| | ||||| ||| || | ||||||| Sbjct 1742378 ACGAGTTTCCGAAACTTGCAATTACTTTGCCAATCTTTTTGCACCCCAATCAATTCTTTC 1742437 Query 1644 CAGTG----CTTTAGCTTTAGATA-GTGCGGTGCGACATCATCAATGACGTTATA 1693 || || || | ||||| || ||| || || |||||||||||||| ||||| Sbjct 1742438 CAATGCTACCTACATCTTTAAGTATGTG-GGAGCTACATCATCAATGACATTATA 1742491 Score = 105 bits (116), Expect = 1e-19 Identities = 312/466 (67%), Gaps = 14/466 (3%) Strand=Plus/Plus Query 1974 TTGTGATGTTGAAGGAAGAAA-TGTTGCGGTTGTTCTTCCTTTATTATTTGCAGAGCTGC 2032 || |||| ||| || |||| | || ||| |||| | ||||||||||| | | || Sbjct 1743025 TTATGATATTGTAGAGTGAAACTCTTTGGGTCATTCT-CTTTTATTATTTGTAATGTTGA 1743083 Query 2033 CTCTGCTGATCCTGCATTTAACGCTTTAGCATATGTGTCGTTAGCAGATTGCTGACCTCC 2092 ||| ||| | | ||| | |||||||| ||| || | | ||||| || ||| Sbjct 1743084 ATCTCTTGACCTAGAATTAATCGCTTTAGTGTATACATCTACAACTATTTGCTTACATCC 1743143 Query 2093 TCTAGCAGATCTGCCGTCGATCTGGAACTGTCCCCATTCAACTGTA-TCTCCGTCCTTGT 2151 ||||||||||| || || || || || | | || || || ||| ||||| ||||| | Sbjct 1743144 CCTAGCAGATCTTCCATCAATTTGAAAATCATCTCAATCTAC-GTAGTCTCCCTCCTTTT 1743202 Query 2152 CGATGTAGGACTTGACGTCGGAGCTTGATTTAGCTCCCTGTATGTTCGGATGGAAATGTG 2211 ||||||| || || || | ||| ||||||||| || | || ||||||| || Sbjct 1743203 CGATGTATGATTTAACATTAGAGGTTGATTTAGAAAATTGAACATTTTGATGGAATTGAA 1743262 Query 2212 CTGACCTGGTTGGGGAGA-CCAGATCGAAGAATCTGTTATTCGTGCACTGGTATTTTCCT 2270 | || ||| ||| || | || || |||| | ||| ||||| | |||| ||| Sbjct 1743263 TGGTTCT-GTTAGGGTGATATATGTCAAAAAATCATTGATTGGTGCAACAGAATTTACCT 1743321 Query 2271 TCGAACTGGATGAGCACATGTAGATGAGGTTGCCCATCTTCGTGAAATTCTCTGCAGA-T 2329 ||| ||||| || ||||| | ||| |||| ||| | ||| | |||| |||| | | Sbjct 1743322 GTGAAGTGGATAAGTACATGCAAATGTGGTTCCCCGTTGCTGTGTAGTTCTTTGCACACT 1743381 Query 2330 CTTGATGAATTTCTTGTTAACAGG--AGTTGCTAGGTTTTGTATTTGGGAAAGTGCCTCT 2387 ||| |||||||| || ||| ||||| ||| ||| | || ||| || || Sbjct 1743382 CTT-ATGAATTTTAGATTTGTAGGGTAGTTG--AGGCTTTTGAGATGATGAAGAGCATCA 1743438 Query 2388 TCTTTGGTAAGAGAGCA-CTGGGGATAAGTGAGGAAATAGTTCTTG 2432 ||||| || || || || || |||| |||||||||||| || ||| Sbjct 1743439 TCTTTTGTGAGGGAACATCTTGGGA-AAGTGAGGAAATGATTTTTG 1743483 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 8201302148644